/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-176_S15_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-176_S15_L003_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5643
Pairs without alignments under any condition
2748
Pairs that did not map uniquely
1609
Genomic sequence context not extractable (edges of chromosomes)
42
Cytosine Methylation
Total C's analysed
179532
Methylated C's in CpG context
5083
Methylated C's in CHG context
774
Methylated C's in CHH context
7747
Methylated C's in Unknown context
344
Unmethylated C's in CpG context
21581
Unmethylated C's in CHG context
36110
Unmethylated C's in CHH context
108237
Unmethylated C's in Unknown context
1005
Percentage methylation (CpG context)
19.1%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
6.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2585
original top strand
CTOT
189
complementary to original top strand
CTOB
194
complementary to original bottom strand
OB
2633
original bottom strand
Deduplication
Alignments analysed
5601
Unique alignments
5542
Duplicates removed
59
Duplicated alignments were found at 31 different positions
