/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-175_S14_L003_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-175_S14_L003_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6254
Pairs without alignments under any condition
2031
Pairs that did not map uniquely
1715
Genomic sequence context not extractable (edges of chromosomes)
30
Cytosine Methylation
Total C's analysed
196517
Methylated C's in CpG context
5864
Methylated C's in CHG context
1015
Methylated C's in CHH context
9465
Methylated C's in Unknown context
336
Unmethylated C's in CpG context
21197
Unmethylated C's in CHG context
40313
Unmethylated C's in CHH context
118663
Unmethylated C's in Unknown context
1227
Percentage methylation (CpG context)
21.7%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
7.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2814
original top strand
CTOT
215
complementary to original top strand
CTOB
252
complementary to original bottom strand
OB
2943
original bottom strand
Deduplication
Alignments analysed
6224
Unique alignments
6166
Duplicates removed
58
Duplicated alignments were found at 33 different positions
