/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-170_S13_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-170_S13_L002_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5541
Pairs without alignments under any condition
2776
Pairs that did not map uniquely
1683
Genomic sequence context not extractable (edges of chromosomes)
42
Cytosine Methylation
Total C's analysed
166177
Methylated C's in CpG context
4588
Methylated C's in CHG context
998
Methylated C's in CHH context
10248
Methylated C's in Unknown context
517
Unmethylated C's in CpG context
18970
Unmethylated C's in CHG context
33294
Unmethylated C's in CHH context
98079
Unmethylated C's in Unknown context
1167
Percentage methylation (CpG context)
19.5%
Percentage methylation (CHG context)
2.9%
Percentage methylation (CHH context)
9.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2418
original top strand
CTOT
335
complementary to original top strand
CTOB
362
complementary to original bottom strand
OB
2384
original bottom strand
Deduplication
Alignments analysed
5499
Unique alignments
5430
Duplicates removed
69
Duplicated alignments were found at 36 different positions
