/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-169_S12_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-169_S12_L002_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5906
Pairs without alignments under any condition
2195
Pairs that did not map uniquely
1899
Genomic sequence context not extractable (edges of chromosomes)
17
Cytosine Methylation
Total C's analysed
181382
Methylated C's in CpG context
5320
Methylated C's in CHG context
1087
Methylated C's in CHH context
11305
Methylated C's in Unknown context
468
Unmethylated C's in CpG context
19942
Unmethylated C's in CHG context
37165
Unmethylated C's in CHH context
106563
Unmethylated C's in Unknown context
1094
Percentage methylation (CpG context)
21.1%
Percentage methylation (CHG context)
2.8%
Percentage methylation (CHH context)
9.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2556
original top strand
CTOT
333
complementary to original top strand
CTOB
327
complementary to original bottom strand
OB
2673
original bottom strand
Deduplication
Alignments analysed
5889
Unique alignments
5849
Duplicates removed
40
Duplicated alignments were found at 27 different positions
