/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-168_S11_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-168_S11_L002_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6077
Pairs without alignments under any condition
2103
Pairs that did not map uniquely
1820
Genomic sequence context not extractable (edges of chromosomes)
29
Cytosine Methylation
Total C's analysed
194927
Methylated C's in CpG context
6185
Methylated C's in CHG context
967
Methylated C's in CHH context
9850
Methylated C's in Unknown context
309
Unmethylated C's in CpG context
22483
Unmethylated C's in CHG context
40517
Unmethylated C's in CHH context
114925
Unmethylated C's in Unknown context
1145
Percentage methylation (CpG context)
21.6%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
7.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2767
original top strand
CTOT
220
complementary to original top strand
CTOB
218
complementary to original bottom strand
OB
2843
original bottom strand
Deduplication
Alignments analysed
6048
Unique alignments
5990
Duplicates removed
58
Duplicated alignments were found at 33 different positions
