/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-167_S10_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-167_S10_L002_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6346
Pairs without alignments under any condition
1856
Pairs that did not map uniquely
1798
Genomic sequence context not extractable (edges of chromosomes)
39
Cytosine Methylation
Total C's analysed
204370
Methylated C's in CpG context
6423
Methylated C's in CHG context
1384
Methylated C's in CHH context
9741
Methylated C's in Unknown context
280
Unmethylated C's in CpG context
21477
Unmethylated C's in CHG context
42067
Unmethylated C's in CHH context
123278
Unmethylated C's in Unknown context
1147
Percentage methylation (CpG context)
23.0%
Percentage methylation (CHG context)
3.2%
Percentage methylation (CHH context)
7.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2950
original top strand
CTOT
206
complementary to original top strand
CTOB
201
complementary to original bottom strand
OB
2950
original bottom strand
Deduplication
Alignments analysed
6307
Unique alignments
6273
Duplicates removed
34
Duplicated alignments were found at 25 different positions
