/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-162_S9_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-162_S9_L002_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5473
Pairs without alignments under any condition
2823
Pairs that did not map uniquely
1704
Genomic sequence context not extractable (edges of chromosomes)
27
Cytosine Methylation
Total C's analysed
163512
Methylated C's in CpG context
4770
Methylated C's in CHG context
1006
Methylated C's in CHH context
11266
Methylated C's in Unknown context
452
Unmethylated C's in CpG context
17324
Unmethylated C's in CHG context
32536
Unmethylated C's in CHH context
96610
Unmethylated C's in Unknown context
1098
Percentage methylation (CpG context)
21.6%
Percentage methylation (CHG context)
3.0%
Percentage methylation (CHH context)
10.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2296
original top strand
CTOT
339
complementary to original top strand
CTOB
379
complementary to original bottom strand
OB
2432
original bottom strand
Deduplication
Alignments analysed
5446
Unique alignments
5391
Duplicates removed
55
Duplicated alignments were found at 24 different positions
