/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-161_S8_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-161_S8_L002_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5289
Pairs without alignments under any condition
3106
Pairs that did not map uniquely
1605
Genomic sequence context not extractable (edges of chromosomes)
25
Cytosine Methylation
Total C's analysed
160308
Methylated C's in CpG context
4635
Methylated C's in CHG context
925
Methylated C's in CHH context
10169
Methylated C's in Unknown context
506
Unmethylated C's in CpG context
17585
Unmethylated C's in CHG context
31714
Unmethylated C's in CHH context
95280
Unmethylated C's in Unknown context
1043
Percentage methylation (CpG context)
20.9%
Percentage methylation (CHG context)
2.8%
Percentage methylation (CHH context)
9.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2288
original top strand
CTOT
306
complementary to original top strand
CTOB
343
complementary to original bottom strand
OB
2327
original bottom strand
Deduplication
Alignments analysed
5264
Unique alignments
5222
Duplicates removed
42
Duplicated alignments were found at 20 different positions
