/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-160_S7_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-160_S7_L002_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5657
Pairs without alignments under any condition
2476
Pairs that did not map uniquely
1867
Genomic sequence context not extractable (edges of chromosomes)
42
Cytosine Methylation
Total C's analysed
173653
Methylated C's in CpG context
5108
Methylated C's in CHG context
958
Methylated C's in CHH context
10495
Methylated C's in Unknown context
431
Unmethylated C's in CpG context
19596
Unmethylated C's in CHG context
34508
Unmethylated C's in CHH context
102988
Unmethylated C's in Unknown context
1139
Percentage methylation (CpG context)
20.7%
Percentage methylation (CHG context)
2.7%
Percentage methylation (CHH context)
9.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2329
original top strand
CTOT
335
complementary to original top strand
CTOB
317
complementary to original bottom strand
OB
2634
original bottom strand
Deduplication
Alignments analysed
5615
Unique alignments
5535
Duplicates removed
80
Duplicated alignments were found at 38 different positions
