/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-154_S5_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-154_S5_L002_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5675
Pairs without alignments under any condition
2748
Pairs that did not map uniquely
1577
Genomic sequence context not extractable (edges of chromosomes)
40
Cytosine Methylation
Total C's analysed
177911
Methylated C's in CpG context
5775
Methylated C's in CHG context
909
Methylated C's in CHH context
8985
Methylated C's in Unknown context
418
Unmethylated C's in CpG context
18309
Unmethylated C's in CHG context
35774
Unmethylated C's in CHH context
108159
Unmethylated C's in Unknown context
1008
Percentage methylation (CpG context)
24.0%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
7.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2575
original top strand
CTOT
229
complementary to original top strand
CTOB
246
complementary to original bottom strand
OB
2585
original bottom strand
Deduplication
Alignments analysed
5635
Unique alignments
5602
Duplicates removed
33
Duplicated alignments were found at 26 different positions
