/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-153_S4_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-153_S4_L002_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6130
Pairs without alignments under any condition
2055
Pairs that did not map uniquely
1815
Genomic sequence context not extractable (edges of chromosomes)
44
Cytosine Methylation
Total C's analysed
193775
Methylated C's in CpG context
6046
Methylated C's in CHG context
1009
Methylated C's in CHH context
11493
Methylated C's in Unknown context
372
Unmethylated C's in CpG context
22307
Unmethylated C's in CHG context
39851
Unmethylated C's in CHH context
113069
Unmethylated C's in Unknown context
1138
Percentage methylation (CpG context)
21.3%
Percentage methylation (CHG context)
2.5%
Percentage methylation (CHH context)
9.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2652
original top strand
CTOT
259
complementary to original top strand
CTOB
272
complementary to original bottom strand
OB
2903
original bottom strand
Deduplication
Alignments analysed
6086
Unique alignments
6020
Duplicates removed
66
Duplicated alignments were found at 30 different positions
