/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-152_S3_L002_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-152_S3_L002_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
5756
Pairs without alignments under any condition
2446
Pairs that did not map uniquely
1798
Genomic sequence context not extractable (edges of chromosomes)
30
Cytosine Methylation
Total C's analysed
182157
Methylated C's in CpG context
5913
Methylated C's in CHG context
975
Methylated C's in CHH context
9229
Methylated C's in Unknown context
296
Unmethylated C's in CpG context
19371
Unmethylated C's in CHG context
36413
Unmethylated C's in CHH context
110256
Unmethylated C's in Unknown context
1003
Percentage methylation (CpG context)
23.4%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
7.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2618
original top strand
CTOT
206
complementary to original top strand
CTOB
216
complementary to original bottom strand
OB
2686
original bottom strand
Deduplication
Alignments analysed
5726
Unique alignments
5685
Duplicates removed
41
Duplicated alignments were found at 25 different positions
