/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-143_S37_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-143_S37_L005_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6311
Pairs without alignments under any condition
1939
Pairs that did not map uniquely
1750
Genomic sequence context not extractable (edges of chromosomes)
10
Cytosine Methylation
Total C's analysed
198698
Methylated C's in CpG context
6018
Methylated C's in CHG context
973
Methylated C's in CHH context
7682
Methylated C's in Unknown context
306
Unmethylated C's in CpG context
21136
Unmethylated C's in CHG context
40401
Unmethylated C's in CHH context
122488
Unmethylated C's in Unknown context
1029
Percentage methylation (CpG context)
22.2%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
5.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2945
original top strand
CTOT
185
complementary to original top strand
CTOB
167
complementary to original bottom strand
OB
3004
original bottom strand
Deduplication
Alignments analysed
6301
Unique alignments
6248
Duplicates removed
53
Duplicated alignments were found at 36 different positions
