/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-136_S36_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-136_S36_L005_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6232
Pairs without alignments under any condition
1933
Pairs that did not map uniquely
1835
Genomic sequence context not extractable (edges of chromosomes)
22
Cytosine Methylation
Total C's analysed
195193
Methylated C's in CpG context
5275
Methylated C's in CHG context
935
Methylated C's in CHH context
6737
Methylated C's in Unknown context
256
Unmethylated C's in CpG context
21796
Unmethylated C's in CHG context
39263
Unmethylated C's in CHH context
121187
Unmethylated C's in Unknown context
1018
Percentage methylation (CpG context)
19.5%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
5.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2897
original top strand
CTOT
170
complementary to original top strand
CTOB
199
complementary to original bottom strand
OB
2944
original bottom strand
Deduplication
Alignments analysed
6210
Unique alignments
6113
Duplicates removed
97
Duplicated alignments were found at 41 different positions
