/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-135_S35_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-135_S35_L005_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6330
Pairs without alignments under any condition
1708
Pairs that did not map uniquely
1962
Genomic sequence context not extractable (edges of chromosomes)
22
Cytosine Methylation
Total C's analysed
195995
Methylated C's in CpG context
5649
Methylated C's in CHG context
1064
Methylated C's in CHH context
8266
Methylated C's in Unknown context
350
Unmethylated C's in CpG context
21802
Unmethylated C's in CHG context
38695
Unmethylated C's in CHH context
120519
Unmethylated C's in Unknown context
1134
Percentage methylation (CpG context)
20.6%
Percentage methylation (CHG context)
2.7%
Percentage methylation (CHH context)
6.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2909
original top strand
CTOT
253
complementary to original top strand
CTOB
219
complementary to original bottom strand
OB
2927
original bottom strand
Deduplication
Alignments analysed
6308
Unique alignments
6204
Duplicates removed
104
Duplicated alignments were found at 53 different positions
