/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-128_S34_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-128_S34_L005_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6564
Pairs without alignments under any condition
1667
Pairs that did not map uniquely
1769
Genomic sequence context not extractable (edges of chromosomes)
25
Cytosine Methylation
Total C's analysed
211134
Methylated C's in CpG context
6362
Methylated C's in CHG context
1036
Methylated C's in CHH context
7106
Methylated C's in Unknown context
257
Unmethylated C's in CpG context
23729
Unmethylated C's in CHG context
42062
Unmethylated C's in CHH context
130839
Unmethylated C's in Unknown context
1050
Percentage methylation (CpG context)
21.1%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
5.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3060
original top strand
CTOT
159
complementary to original top strand
CTOB
158
complementary to original bottom strand
OB
3162
original bottom strand
Deduplication
Alignments analysed
6539
Unique alignments
6450
Duplicates removed
89
Duplicated alignments were found at 55 different positions
