/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-127_S33_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-127_S33_L005_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6581
Pairs without alignments under any condition
1609
Pairs that did not map uniquely
1810
Genomic sequence context not extractable (edges of chromosomes)
11
Cytosine Methylation
Total C's analysed
211984
Methylated C's in CpG context
6231
Methylated C's in CHG context
1042
Methylated C's in CHH context
7448
Methylated C's in Unknown context
236
Unmethylated C's in CpG context
23778
Unmethylated C's in CHG context
42363
Unmethylated C's in CHH context
131122
Unmethylated C's in Unknown context
976
Percentage methylation (CpG context)
20.8%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
5.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3113
original top strand
CTOT
157
complementary to original top strand
CTOB
159
complementary to original bottom strand
OB
3141
original bottom strand
Deduplication
Alignments analysed
6570
Unique alignments
6493
Duplicates removed
77
Duplicated alignments were found at 45 different positions
