/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-120_S32_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-120_S32_L005_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6512
Pairs without alignments under any condition
1703
Pairs that did not map uniquely
1785
Genomic sequence context not extractable (edges of chromosomes)
28
Cytosine Methylation
Total C's analysed
207395
Methylated C's in CpG context
6206
Methylated C's in CHG context
1007
Methylated C's in CHH context
7369
Methylated C's in Unknown context
220
Unmethylated C's in CpG context
21912
Unmethylated C's in CHG context
41660
Unmethylated C's in CHH context
129241
Unmethylated C's in Unknown context
987
Percentage methylation (CpG context)
22.1%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
5.4%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3090
original top strand
CTOT
158
complementary to original top strand
CTOB
153
complementary to original bottom strand
OB
3083
original bottom strand
Deduplication
Alignments analysed
6484
Unique alignments
6411
Duplicates removed
73
Duplicated alignments were found at 29 different positions
