/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-119_S31_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-119_S31_L005_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6398
Pairs without alignments under any condition
1792
Pairs that did not map uniquely
1810
Genomic sequence context not extractable (edges of chromosomes)
17
Cytosine Methylation
Total C's analysed
211063
Methylated C's in CpG context
5513
Methylated C's in CHG context
1027
Methylated C's in CHH context
6114
Methylated C's in Unknown context
209
Unmethylated C's in CpG context
27762
Unmethylated C's in CHG context
42644
Unmethylated C's in CHH context
128003
Unmethylated C's in Unknown context
1057
Percentage methylation (CpG context)
16.6%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
4.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2937
original top strand
CTOT
152
complementary to original top strand
CTOB
158
complementary to original bottom strand
OB
3134
original bottom strand
Deduplication
Alignments analysed
6381
Unique alignments
6298
Duplicates removed
83
Duplicated alignments were found at 54 different positions