/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-113_S30_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-113_S30_L005_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6583
Pairs without alignments under any condition
1673
Pairs that did not map uniquely
1744
Genomic sequence context not extractable (edges of chromosomes)
26
Cytosine Methylation
Total C's analysed
211918
Methylated C's in CpG context
5728
Methylated C's in CHG context
1046
Methylated C's in CHH context
7058
Methylated C's in Unknown context
257
Unmethylated C's in CpG context
24472
Unmethylated C's in CHG context
42311
Unmethylated C's in CHH context
131303
Unmethylated C's in Unknown context
1148
Percentage methylation (CpG context)
19.0%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
5.1%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3007
original top strand
CTOT
192
complementary to original top strand
CTOB
150
complementary to original bottom strand
OB
3208
original bottom strand
Deduplication
Alignments analysed
6557
Unique alignments
6426
Duplicates removed
131
Duplicated alignments were found at 63 different positions
