/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-111_S29_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-111_S29_L005_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6440
Pairs without alignments under any condition
1698
Pairs that did not map uniquely
1862
Genomic sequence context not extractable (edges of chromosomes)
27
Cytosine Methylation
Total C's analysed
200670
Methylated C's in CpG context
5920
Methylated C's in CHG context
989
Methylated C's in CHH context
6386
Methylated C's in Unknown context
270
Unmethylated C's in CpG context
21438
Unmethylated C's in CHG context
40265
Unmethylated C's in CHH context
125672
Unmethylated C's in Unknown context
1005
Percentage methylation (CpG context)
21.6%
Percentage methylation (CHG context)
2.4%
Percentage methylation (CHH context)
4.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3050
original top strand
CTOT
176
complementary to original top strand
CTOB
172
complementary to original bottom strand
OB
3015
original bottom strand
Deduplication
Alignments analysed
6413
Unique alignments
6345
Duplicates removed
68
Duplicated alignments were found at 32 different positions
