/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-104_S28_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-104_S28_L005_R2_001_val_2.fq.gz
Data processed at 17:55 on 2018-10-25
Alignment Stats
Sequence pairs analysed in total
10000
Paired-end alignments with a unique best hit
6548
Pairs without alignments under any condition
1621
Pairs that did not map uniquely
1831
Genomic sequence context not extractable (edges of chromosomes)
14
Cytosine Methylation
Total C's analysed
205827
Methylated C's in CpG context
6353
Methylated C's in CHG context
952
Methylated C's in CHH context
7875
Methylated C's in Unknown context
257
Unmethylated C's in CpG context
21220
Unmethylated C's in CHG context
41078
Unmethylated C's in CHH context
128349
Unmethylated C's in Unknown context
1030
Percentage methylation (CpG context)
23.0%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
5.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3080
original top strand
CTOT
161
complementary to original top strand
CTOB
202
complementary to original bottom strand
OB
3091
original bottom strand
Deduplication
Alignments analysed
6534
Unique alignments
6453
Duplicates removed
81
Duplicated alignments were found at 32 different positions
