CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 70 137 33.82 207 2 55 133 29.26 188 3 57 115 33.14 172 4 62 95 39.49 157 5 60 79 43.17 139 6 57 84 40.43 141 7 55 83 39.86 138 8 39 103 27.46 142 9 26 82 24.07 108 10 33 84 28.21 117 11 27 103 20.77 130 12 30 86 25.86 116 13 23 105 17.97 128 14 39 104 27.27 143 15 24 70 25.53 94 16 28 97 22.40 125 17 24 85 22.02 109 18 29 85 25.44 114 19 30 101 22.90 131 20 33 102 24.44 135 21 17 81 17.35 98 22 22 104 17.46 126 23 23 82 21.90 105 24 20 84 19.23 104 25 27 100 21.26 127 26 24 97 19.83 121 27 17 82 17.17 99 28 30 104 22.39 134 29 23 109 17.42 132 30 36 107 25.17 143 31 28 91 23.53 119 32 28 88 24.14 116 33 18 98 15.52 116 34 27 92 22.69 119 35 24 105 18.60 129 36 24 99 19.51 123 37 24 75 24.24 99 38 18 99 15.38 117 39 23 83 21.70 106 40 17 90 15.89 107 41 19 97 16.38 116 42 24 111 17.78 135 43 17 90 15.89 107 44 19 81 19.00 100 45 23 96 19.33 119 46 15 113 11.72 128 47 23 83 21.70 106 48 25 101 19.84 126 49 18 96 15.79 114 50 19 96 16.52 115 51 24 92 20.69 116 52 23 81 22.12 104 53 18 92 16.36 110 54 18 84 17.65 102 55 22 92 19.30 114 56 22 81 21.36 103 57 14 71 16.47 85 58 21 99 17.50 120 59 23 92 20.00 115 60 14 91 13.33 105 61 26 85 23.42 111 62 25 100 20.00 125 63 21 95 18.10 116 64 24 100 19.35 124 65 21 92 18.58 113 66 34 91 27.20 125 67 19 78 19.59 97 68 27 88 23.48 115 69 17 87 16.35 104 70 24 85 22.02 109 71 26 88 22.81 114 72 20 77 20.62 97 73 14 73 16.09 87 74 23 72 24.21 95 75 18 68 20.93 86 76 15 68 18.07 83 77 30 70 30.00 100 78 15 75 16.67 90 79 19 60 24.05 79 80 8 71 10.13 79 81 18 81 18.18 99 82 12 71 14.46 83 83 21 79 21.00 100 84 15 65 18.75 80 85 13 98 11.71 111 86 16 66 19.51 82 87 21 68 23.60 89 88 13 75 14.77 88 89 13 68 16.05 81 90 12 69 14.81 81 91 14 78 15.22 92 92 13 64 16.88 77 93 14 66 17.50 80 94 20 70 22.22 90 95 9 74 10.84 83 96 14 75 15.73 89 97 12 65 15.58 77 98 12 58 17.14 70 99 14 38 26.92 52 100 11 55 16.67 66 101 12 50 19.35 62 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 104 167 38.38 271 2 57 156 26.76 213 3 36 137 20.81 173 4 20 146 12.05 166 5 16 151 9.58 167 6 15 143 9.49 158 7 6 160 3.61 166 8 7 192 3.52 199 9 2 159 1.24 161 10 4 172 2.27 176 11 4 200 1.96 204 12 6 186 3.12 192 13 2 162 1.22 164 14 6 130 4.41 136 15 2 176 1.12 178 16 5 172 2.82 177 17 1 167 0.60 168 18 3 145 2.03 148 19 3 166 1.78 169 20 3 178 1.66 181 21 2 173 1.14 175 22 4 159 2.45 163 23 7 163 4.12 170 24 6 177 3.28 183 25 4 187 2.09 191 26 2 162 1.22 164 27 2 183 1.08 185 28 5 171 2.84 176 29 4 164 2.38 168 30 1 164 0.61 165 31 4 157 2.48 161 32 1 182 0.55 183 33 1 164 0.61 165 34 2 166 1.19 168 35 0 168 0.00 168 36 3 179 1.65 182 37 2 164 1.20 166 38 3 159 1.85 162 39 4 155 2.52 159 40 1 166 0.60 167 41 3 164 1.80 167 42 4 184 2.13 188 43 2 160 1.23 162 44 2 162 1.22 164 45 3 164 1.80 167 46 2 159 1.24 161 47 1 160 0.62 161 48 3 173 1.70 176 49 4 165 2.37 169 50 1 162 0.61 163 51 5 165 2.94 170 52 3 156 1.89 159 53 3 157 1.88 160 54 2 166 1.19 168 55 1 165 0.60 166 56 0 173 0.00 173 57 3 186 1.59 189 58 1 159 0.62 160 59 4 176 2.22 180 60 2 211 0.94 213 61 1 173 0.57 174 62 1 166 0.60 167 63 2 155 1.27 157 64 0 160 0.00 160 65 4 181 2.16 185 66 3 140 2.10 143 67 2 168 1.18 170 68 2 155 1.27 157 69 2 138 1.43 140 70 2 162 1.22 164 71 1 170 0.58 171 72 3 140 2.10 143 73 1 141 0.70 142 74 0 150 0.00 150 75 3 142 2.07 145 76 0 156 0.00 156 77 4 142 2.74 146 78 6 145 3.97 151 79 4 148 2.63 152 80 2 128 1.54 130 81 4 121 3.20 125 82 1 142 0.70 143 83 1 129 0.77 130 84 1 117 0.85 118 85 2 170 1.16 172 86 2 131 1.50 133 87 3 144 2.04 147 88 5 131 3.68 136 89 1 106 0.93 107 90 1 112 0.88 113 91 1 111 0.89 112 92 6 138 4.17 144 93 2 103 1.90 105 94 5 106 4.50 111 95 1 115 0.86 116 96 1 115 0.86 116 97 3 100 2.91 103 98 2 101 1.94 103 99 1 53 1.85 54 100 4 67 5.63 71 101 3 93 3.12 96 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 140 239 36.94 379 2 146 277 34.52 423 3 104 281 27.01 385 4 95 261 26.69 356 5 90 334 21.23 424 6 73 361 16.82 434 7 88 446 16.48 534 8 81 461 14.94 542 9 64 437 12.77 501 10 63 478 11.65 541 11 77 457 14.42 534 12 63 447 12.35 510 13 81 442 15.49 523 14 86 497 14.75 583 15 58 499 10.41 557 16 79 510 13.41 589 17 73 501 12.72 574 18 72 518 12.20 590 19 84 531 13.66 615 20 87 583 12.99 670 21 61 548 10.02 609 22 92 549 14.35 641 23 81 558 12.68 639 24 58 573 9.19 631 25 69 552 11.11 621 26 68 547 11.06 615 27 69 563 10.92 632 28 71 582 10.87 653 29 61 550 9.98 611 30 57 546 9.45 603 31 64 525 10.87 589 32 70 538 11.51 608 33 56 571 8.93 627 34 48 548 8.05 596 35 64 561 10.24 625 36 47 539 8.02 586 37 65 544 10.67 609 38 60 564 9.62 624 39 50 570 8.06 620 40 56 573 8.90 629 41 59 538 9.88 597 42 53 537 8.98 590 43 58 538 9.73 596 44 57 573 9.05 630 45 47 564 7.69 611 46 47 534 8.09 581 47 54 534 9.18 588 48 39 510 7.10 549 49 45 553 7.53 598 50 55 519 9.58 574 51 44 513 7.90 557 52 46 521 8.11 567 53 49 489 9.11 538 54 43 554 7.20 597 55 43 521 7.62 564 56 42 536 7.27 578 57 41 556 6.87 597 58 39 588 6.22 627 59 38 530 6.69 568 60 43 502 7.89 545 61 36 518 6.50 554 62 41 508 7.47 549 63 36 500 6.72 536 64 46 508 8.30 554 65 34 497 6.40 531 66 34 518 6.16 552 67 44 464 8.66 508 68 39 493 7.33 532 69 37 442 7.72 479 70 41 440 8.52 481 71 41 491 7.71 532 72 35 467 6.97 502 73 33 456 6.75 489 74 44 459 8.75 503 75 24 457 4.99 481 76 28 471 5.61 499 77 42 438 8.75 480 78 21 394 5.06 415 79 38 421 8.28 459 80 34 377 8.27 411 81 24 399 5.67 423 82 29 402 6.73 431 83 38 399 8.70 437 84 28 400 6.54 428 85 32 392 7.55 424 86 36 359 9.11 395 87 25 367 6.38 392 88 19 396 4.58 415 89 29 379 7.11 408 90 26 363 6.68 389 91 25 374 6.27 399 92 28 353 7.35 381 93 18 373 4.60 391 94 26 367 6.62 393 95 26 340 7.10 366 96 21 342 5.79 363 97 31 327 8.66 358 98 13 315 3.96 328 99 9 229 3.78 238 100 19 196 8.84 215 101 9 308 2.84 317 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 58 74 43.94 132 2 38 75 33.63 113 3 46 78 37.10 124 4 35 85 29.17 120 5 19 124 13.29 143 6 12 62 16.22 74 7 10 66 13.16 76 8 9 62 12.68 71 9 10 62 13.89 72 10 9 51 15.00 60 11 8 53 13.11 61 12 20 73 21.51 93 13 14 66 17.50 80 14 17 54 23.94 71 15 6 48 11.11 54 16 16 42 27.59 58 17 12 46 20.69 58 18 10 36 21.74 46 19 19 45 29.69 64 20 10 58 14.71 68 21 12 35 25.53 47 22 13 35 27.08 48 23 10 54 15.62 64 24 12 43 21.82 55 25 9 36 20.00 45 26 7 43 14.00 50 27 14 61 18.67 75 28 14 27 34.15 41 29 13 29 30.95 42 30 15 44 25.42 59 31 10 50 16.67 60 32 10 40 20.00 50 33 8 36 18.18 44 34 11 48 18.64 59 35 10 46 17.86 56 36 9 34 20.93 43 37 9 34 20.93 43 38 9 51 15.00 60 39 9 32 21.95 41 40 14 47 22.95 61 41 7 31 18.42 38 42 14 51 21.54 65 43 8 41 16.33 49 44 4 33 10.81 37 45 12 37 24.49 49 46 9 37 19.57 46 47 8 39 17.02 47 48 9 28 24.32 37 49 12 41 22.64 53 50 8 28 22.22 36 51 4 28 12.50 32 52 10 29 25.64 39 53 10 33 23.26 43 54 10 45 18.18 55 55 5 27 15.62 32 56 8 26 23.53 34 57 7 22 24.14 29 58 7 28 20.00 35 59 5 30 14.29 35 60 6 26 18.75 32 61 5 33 13.16 38 62 7 16 30.43 23 63 2 15 11.76 17 64 9 33 21.43 42 65 7 26 21.21 33 66 4 23 14.81 27 67 4 21 16.00 25 68 7 33 17.50 40 69 10 32 23.81 42 70 2 25 7.41 27 71 3 16 15.79 19 72 6 12 33.33 18 73 3 16 15.79 19 74 6 16 27.27 22 75 4 21 16.00 25 76 3 25 10.71 28 77 6 28 17.65 34 78 3 23 11.54 26 79 4 15 21.05 19 80 5 18 21.74 23 81 6 17 26.09 23 82 1 18 5.26 19 83 7 17 29.17 24 84 4 17 19.05 21 85 2 9 18.18 11 86 4 15 21.05 19 87 2 16 11.11 18 88 3 24 11.11 27 89 2 13 13.33 15 90 3 16 15.79 19 91 3 15 16.67 18 92 2 15 11.76 17 93 5 14 26.32 19 94 6 11 35.29 17 95 3 12 20.00 15 96 4 12 25.00 16 97 3 17 15.00 20 98 6 14 30.00 20 99 3 1 75.00 4 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 22 97 18.49 119 2 23 89 20.54 112 3 13 92 12.38 105 4 24 109 18.05 133 5 1 155 0.64 156 6 3 186 1.59 189 7 0 113 0.00 113 8 2 124 1.59 126 9 0 95 0.00 95 10 1 105 0.94 106 11 3 132 2.22 135 12 1 118 0.84 119 13 2 109 1.80 111 14 3 108 2.70 111 15 8 119 6.30 127 16 2 93 2.11 95 17 2 93 2.11 95 18 2 81 2.41 83 19 1 95 1.04 96 20 1 79 1.25 80 21 1 88 1.12 89 22 2 77 2.53 79 23 1 82 1.20 83 24 3 98 2.97 101 25 3 72 4.00 75 26 4 83 4.60 87 27 3 79 3.66 82 28 0 91 0.00 91 29 2 74 2.63 76 30 6 92 6.12 98 31 1 81 1.22 82 32 1 63 1.56 64 33 2 92 2.13 94 34 4 89 4.30 93 35 4 94 4.08 98 36 3 73 3.95 76 37 2 64 3.03 66 38 3 74 3.90 77 39 0 94 0.00 94 40 0 78 0.00 78 41 1 53 1.85 54 42 0 45 0.00 45 43 2 81 2.41 83 44 3 76 3.80 79 45 2 52 3.70 54 46 3 52 5.45 55 47 0 46 0.00 46 48 0 52 0.00 52 49 0 54 0.00 54 50 2 60 3.23 62 51 1 52 1.89 53 52 2 47 4.08 49 53 1 64 1.54 65 54 0 39 0.00 39 55 2 57 3.39 59 56 0 49 0.00 49 57 0 49 0.00 49 58 1 60 1.64 61 59 0 44 0.00 44 60 1 49 2.00 50 61 0 48 0.00 48 62 1 47 2.08 48 63 0 59 0.00 59 64 0 42 0.00 42 65 0 54 0.00 54 66 0 35 0.00 35 67 0 41 0.00 41 68 2 44 4.35 46 69 0 40 0.00 40 70 0 46 0.00 46 71 1 44 2.22 45 72 0 46 0.00 46 73 0 40 0.00 40 74 1 32 3.03 33 75 0 29 0.00 29 76 1 34 2.86 35 77 1 35 2.78 36 78 0 49 0.00 49 79 1 34 2.86 35 80 0 27 0.00 27 81 1 28 3.45 29 82 0 37 0.00 37 83 0 32 0.00 32 84 1 30 3.23 31 85 0 32 0.00 32 86 0 21 0.00 21 87 0 23 0.00 23 88 0 28 0.00 28 89 0 39 0.00 39 90 0 28 0.00 28 91 1 34 2.86 35 92 0 26 0.00 26 93 0 29 0.00 29 94 0 27 0.00 27 95 2 30 6.25 32 96 0 37 0.00 37 97 1 26 3.70 27 98 0 26 0.00 26 99 0 0 0 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 87 164 34.66 251 2 84 142 37.17 226 3 95 130 42.22 225 4 72 129 35.82 201 5 37 218 14.51 255 6 53 309 14.64 362 7 39 404 8.80 443 8 45 406 9.98 451 9 50 353 12.41 403 10 46 346 11.73 392 11 34 342 9.04 376 12 50 318 13.59 368 13 41 320 11.36 361 14 37 332 10.03 369 15 59 324 15.40 383 16 41 315 11.52 356 17 45 311 12.64 356 18 46 323 12.47 369 19 38 350 9.79 388 20 54 325 14.25 379 21 51 317 13.86 368 22 52 316 14.13 368 23 36 268 11.84 304 24 51 257 16.56 308 25 39 266 12.79 305 26 40 296 11.90 336 27 55 272 16.82 327 28 35 288 10.84 323 29 43 268 13.83 311 30 44 256 14.67 300 31 34 251 11.93 285 32 38 242 13.57 280 33 31 240 11.44 271 34 37 219 14.45 256 35 36 257 12.29 293 36 36 273 11.65 309 37 29 245 10.58 274 38 34 247 12.10 281 39 33 233 12.41 266 40 28 231 10.81 259 41 28 214 11.57 242 42 22 216 9.24 238 43 24 193 11.06 217 44 23 229 9.13 252 45 27 210 11.39 237 46 15 230 6.12 245 47 23 218 9.54 241 48 19 196 8.84 215 49 15 204 6.85 219 50 14 178 7.29 192 51 17 196 7.98 213 52 14 176 7.37 190 53 15 184 7.54 199 54 18 180 9.09 198 55 14 142 8.97 156 56 14 193 6.76 207 57 21 157 11.80 178 58 12 160 6.98 172 59 14 145 8.81 159 60 13 151 7.93 164 61 11 128 7.91 139 62 8 132 5.71 140 63 10 147 6.37 157 64 9 114 7.32 123 65 12 129 8.51 141 66 11 157 6.55 168 67 12 149 7.45 161 68 9 152 5.59 161 69 11 121 8.33 132 70 12 113 9.60 125 71 10 123 7.52 133 72 11 113 8.87 124 73 11 132 7.69 143 74 8 108 6.90 116 75 14 117 10.69 131 76 10 123 7.52 133 77 8 129 5.84 137 78 12 115 9.45 127 79 11 150 6.83 161 80 8 124 6.06 132 81 7 126 5.26 133 82 8 104 7.14 112 83 9 121 6.92 130 84 7 118 5.60 125 85 10 98 9.26 108 86 8 112 6.67 120 87 8 88 8.33 96 88 9 118 7.09 127 89 10 112 8.20 122 90 6 108 5.26 114 91 9 99 8.33 108 92 5 118 4.07 123 93 6 104 5.45 110 94 9 93 8.82 102 95 6 87 6.45 93 96 11 93 10.58 104 97 3 98 2.97 101 98 4 90 4.26 94 99 6 2 75.00 8