Sample bismark fastqc samtools trimgalore cutadapt pigz nf-core/methylseq Nextflow BISMARK_ALIGN 0.24.2 BISMARK_COVERAGE2CYTOSINE 0.24.2 BISMARK_DEDUPLICATE 0.24.2 BISMARK_GENOMEPREPARATION 0.24.2 BISMARK_METHYLATIONEXTRACTOR 0.24.2 BISMARK_REPORT 0.24.2 BISMARK_SUMMARY 0.24.2 FastQC 0.12.1 SAMTOOLS_INDEX 1.21 SAMTOOLS_SORT 1.21 TRIMGALORE 0.6.10 4.9 2.8 Workflow v4.0.0-gf3e4b1b 25.04.6