## This directory contains data generated from script https://gannet.fish.washington.edu/metacarcinus/mox_jobs/20200311_TrimGfroger.sh which executed TrimGalore on raw reads from Hollie's coral data.

## Description of directories and files

#File or dir. name	Description
slurm-2098069.out	log file generated from script 20200311_TrimGfroger.sh
slurm-2097888.out	log file generate from script 20200311_TrimGfroger.sh
mox2gannet_rsync.log	log file generated through a screen session on ostrich using screen ctrl +a and shift + h while running rsync to copy data from mox to gannet
md5sum.txt	md5 checksums report from data Steven copied from gannet to mox. Also noted in script.
WGBS_MBD	directory containing all TrimGalore trimmed WGBS and MBD data, trimming reports, and QC data
RRBS	directory containing all TrimGalore trimmed RRBS data, trimming reports, and QC
 data

## Directory contents
#File or dir. name	Description
RRBS/Meth*_val_1.fq	trimmed R1 reads
RRBS/Meth*_val_2.fq	trimmed R2 reads
RRBS/FASTQC/*fastqc*	all FastQC data on trimmed reads
RRBS/FASTQC/multiqc_data	all MultiQC data on trimmed reads
RRBS/FASTQC/multiqc_report_1.html     MultiQC report for RRBS trimmed data

WGBS_MBD/Meth*_val_1.fq     trimmed R1 reads
WGBS_MBD/Meth*_val_2.fq     trimmed R2 reads
WGBS_MBD/FASTQC/*fastqc*     all FastQC data on trimmed reads
WGBS_MBD/FASTQC/multiqc_data       all MultiQC data on trimmed reads
WGBS_MBD/FASTQC/multiqc_report.html	MultiQC report for WGBS_MBD trimmed data