FastQCFastQC Report
Fri 13 Mar 2020
Meth6_R1_001_val_1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameMeth6_R1_001_val_1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences140382105
Sequences flagged as poor quality0
Sequence length20-150
%GC23

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGAATATTAGTATTTTGGGTTTAATTTTTGTGTGGTTAGTGTTAAAAAA4700010.33480121985633426No Hit
AAACATCAACATCTCAAATCCAATCCTCACACAACCAACACCAAAAAACC1617390.11521340273391685No Hit
AAACATCAATATCTCAAATCCAATCCTCACACAACCAACACCAAAAAACC1474000.10499913788869315No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.8)