/var/spool/slurm/d/job2025652/slurm_script: line 20: fg: no job control
No quality encoding type selected. Assuming that the data provided uses Sanger encoded Phred scores (default)

Path to Cutadapt set as: '/gscratch/srlab/programs/miniconda3/bin/cutadapt' (user defined)
2.4
Cutadapt seems to be working fine (tested command '/gscratch/srlab/programs/miniconda3/bin/cutadapt --version')
Writing report to '/gscratch/scrubbed/strigg/analyses/20200306/Meth10_R1_001.fastq.gz_trimming_report.txt'

SUMMARISING RUN PARAMETERS
==========================
Input filename: /gscratch/scrubbed/sr320/froger-raw/00_fastq/Meth10_R1_001.fastq.gz
Trimming mode: single-end
Trim Galore version: 0.4.4_dev
Cutadapt version: 2.4
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; user defined)
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 1 bp
Minimum required sequence length before a sequence gets removed: 20 bp
Running FastQC on the data once trimming has completed
Running FastQC with the following extra arguments: '--outdir /gscratch/scrubbed/strigg/analyses/20200306/FASTQC'
Output file(s) will be GZIP compressed

Writing final adapter and quality trimmed output to Meth10_R1_001_trimmed.fq.gz


  >>> Now performing quality (cutoff 20) and adapter trimming in a single pass for the adapter sequence: 'AGATCGGAAGAGC' from file /gscratch/scrubbed/sr320/froger-raw/00_fastq/Meth10_R1_001.fastq.gz <<< 
slurmstepd: error: *** JOB 2025652 ON n2193 CANCELLED AT 2020-03-06T14:24:26 ***