gtf: 0.7514872550964355
There are 31840 distinct gene ID in the gtf file
There are 31840 distinct transcript ID in the gtf file
There are 31840 one-transcript genes in the gtf file
There are 208535 exons in the gtf file
There are 7933 one-exon transcripts in the gtf file
There are 7933 one-transcript genes with only one exon in the transcript
Average number of transcripts per gene is 1.000000
Average number of exons per transcript is 6.549466
Average number of exons per transcript excluding one-exon tx is 8.390932
Average number of gene per geneGroup is 9.034527
statistic: 0.004391193389892578

read outcome totals across all BAMs
USED: 434967696
NOT_PAIRED: 782318601
NOT_NH_1: 78609134
NOT_EXPECTED_CIGAR: 50901647
NOT_EXPECTED_READ_LENGTH: 0
NOT_EXPECTED_STRAND: 0
EXON_NOT_MATCHED_TO_ANNOTATION: 222746723
JUNCTION_NOT_MATCHED_TO_ANNOTATION: 18546270
CLIPPED: 0
total: 1588090071
outcomes by BAM written to: treatment-control/rmats_temp/2025-12-11-07_49_25_438377_read_outcomes_by_bam.txt

novel: 459.086918592453
The splicing graph and candidate read have been saved into treatment-control/rmats_temp/2025-12-11-07_49_25_438377_*.rmats
save: 7.191833734512329