Nextflow workflow report

[sick_murdock]

Workflow execution completed successfully!
Run times
21-Jul-2025 19:17:32 - 21-Jul-2025 20:33:48 (duration: 1h 16m 16s)
  2661 succeeded  
  0 cached  
  0 ignored  
  1 failed  
Nextflow command
nextflow run nf-core/rnavar -c /gscratch/srlab/strigg/bin/uw_hyak_srlab.config -resume --input samplesheet.csv --genome null --igenomes_ignore --fasta /gscratch/srlab/strigg/GENOMES/Pocillopora_meandrina_HIv1.assembly.fasta --gtf /gscratch/srlab/strigg/GENOMES/Pocillopora_meandrina_HIv1.genes-validated.gtf --skip_variantannotation --skip_baserecalibration true --outdir result
CPU-Hours
285.2 (0% failed)
Launch directory
/mmfs1/gscratch/scrubbed/strigg/analyses/20250721_rnavar
Work directory
/mmfs1/gscratch/scrubbed/strigg/analyses/20250721_rnavar/work
Project directory
/mmfs1/home/strigg/.nextflow/assets/nf-core/rnavar
Script name
main.nf
Script ID
6829325bfeff043a2d4dd1772e7aad18
Workflow session
705c0868-4fd9-475d-8809-a22d63811699
Workflow repository
https://github.com/nf-core/rnavar, revision master (commit hash 6a5ca7896f12ffc3b8a8c97c21cd0abcd7bf2e36)
Workflow profile
standard
Nextflow version
version 24.10.6, build 5937 (23-04-2025 16:53 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)