Sample cat ensemblvep tabix fastqc gatk4 picard samtools snpeff star gawk nf-core/rnavar Nextflow CAT_FASTQ 9.5 ENSEMBLVEP_VEP 113.0 1.21 FASTQC 0.12.1 GATK4_BEDTOINTERVALLIST 4.6.1.0 GATK4_HAPLOTYPECALLER 4.6.1.0 GATK4_INTERVALLISTTOOLS 4.6.1.0 GATK4_MERGEVCFS 4.6.1.0 GATK4_SPLITNCIGARREADS 4.6.1.0 GATK4_VARIANTFILTRATION 4.6.1.0 PICARD_MARKDUPLICATES 3.3.0 SAMTOOLS_FLAGSTAT 1.21 SAMTOOLS_IDXSTATS 1.21 SAMTOOLS_INDEX 1.21 SAMTOOLS_MERGE 1.21 SAMTOOLS_SORT 1.21 SAMTOOLS_STATS 1.21 SNPEFF_SNPEFF 5.1d STAR_ALIGN 1.21 2.7.11b 5.1.0 TABIX 1.2 TABIX_BGZIPTABIX 1.2 TABIX_TABIX 1.2 Workflow v1.1.0-g6a5ca78 24.10.5