Processes execution timeline

Launch time: 06 May 2025 16:13
Elapsed time: 1h 30m 4s
Legend: job wall time / memory usage (RAM)

16.7s / 174.1 MB / CACHED15.8s / 13 MB / CACHED6.6s / 3.2 MB / CACHED24.6s / 243.4 MB / CACHED9.7s / 3.2 MB / CACHED9.6s / 14.9 MB / CACHED27.9s / 186.7 MB / CACHED10m 2s / 2.8 GB / CACHED17.6s / 306.6 MB / CACHED8m / 10 GB / CACHED19m 37s / 13.3 GB / CACHED1m 3s / 12.3 GB / CACHED32.8s / 16.8 MB / CACHED4m 29s / 41.7 GB / CACHED22.7s / 21.5 MB / CACHED1m 7s / 8.3 MB / CACHED19.6s / 3.4 MB / CACHED28.2s / 7.1 MB / CACHED2m 44s / 1.3 GB / CACHED2m 33s / 1.6 GB / CACHED2m 15s / 1.3 GB / CACHED13s / 7 MB / CACHED7.1s / 3.1 MB / CACHED2m 22s / 1.5 GB / CACHED54.1s / 8 MB / CACHED2m 6s / 1.3 GB / CACHED2m 29s / 1.3 GB / CACHED2m 18s / 1.5 GB / CACHED1m 32s / 1.4 GB / CACHED2m 16s / 1.2 GB / CACHED2m 35s / 1.4 GB / CACHED2m 24s / 1.5 GB / CACHED2m 23s / 1.5 GB / CACHED1m 32s / 1.3 GB / CACHED1m 11s / 1.4 GB / CACHED2m 29s / 1.4 GB / CACHED2m 25s / 1.3 GB / CACHED2m 8s / 1.4 GB / CACHED2m 12s / 1.3 GB / CACHED1m 31s / 1.6 GB / CACHED1m 35s / 1.3 GB / CACHED2m 13s / 1.4 GB / CACHED2m 4s / 1.5 GB / CACHED1m 26s / 1.4 GB / CACHED1m 57s / 1.5 GB / CACHED55.1s / 1.2 GB / CACHED1m 13s / 69.5 MB / CACHED13.3s / 15.4 MB / CACHED4m 21s / 3.3 GB / CACHED4m 30s / 4 GB / CACHED3m 24s / 3.3 GB / CACHED3m 48s / 3.9 GB / CACHED4m 7s / 3.5 GB / CACHED4m 39s / 3.5 GB / CACHED4m 20s / 3.5 GB / CACHED4m 18s / 3.2 GB / CACHED2m 2s / 3.3 GB / CACHED1m 47s / 3.4 GB / CACHED1m 45s / 2.8 GB / CACHED1m 55s / 3 GB / CACHED1m 41s / 3.6 GB / CACHED2m 8s / 3.6 GB / CACHED2m 7s / 4 GB / CACHED2m 24s / 3 GB / CACHED1m 58s / 3.6 GB / CACHED2m 25s / 3.8 GB / CACHED1m 46s / 3.4 GB / CACHED1m 48s / 3.4 GB / CACHED2m 16s / 3.8 GB / CACHED2m 9s / 3.6 GB / CACHED1m 44s / 4 GB / CACHED3m 26s / 3.5 GB / CACHED1m 37s / 3.7 GB / CACHED32.7s / 478.5 MB / CACHED1m 13s / 296.7 MB / CACHED58s / 11.3 GB / CACHED33.1s / 13.9 MB / CACHED2m 21s / 1.3 GB32.8s / 103.8 MB17:0018:0019:0020:0021:00NFCORE_RNAVAR:PREPARE_GENOME:GTF2BED (Pocillopora_meandrina_HIv1.genes-validated.gtf)NFCORE_RNAVAR:RNAVAR:CAT_FASTQ (POC-201-TP1)NFCORE_RNAVAR:PREPARE_GENOME:SAMTOOLS_FAIDX (Pocillopora_meandrina_HIv1.assembly.fasta)NFCORE_RNAVAR:PREPARE_GENOME:GATK4_CREATESEQUENCEDICTIONARY (Pocillopora_meandrina_HIv1.assembly.fasta)NFCORE_RNAVAR:PREPARE_GENOME:STAR_INDEXVERSIONNFCORE_RNAVAR:PREPARE_GENOME:REMOVE_UNKNOWN_REGIONS (Pocillopora_meandrina_HIv1.genes-validated)NFCORE_RNAVAR:RNAVAR:GATK4_BEDTOINTERVALLIST (Pocillopora_meandrina_HIv1.genes-validated)NFCORE_RNAVAR:RNAVAR:FASTQC (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:GATK4_INTERVALLISTTOOLS (Pocillopora_meandrina_HIv1.genes-validated)NFCORE_RNAVAR:PREPARE_GENOME:STAR_GENOMEGENERATE (Pocillopora_meandrina_HIv1.assembly.fasta)NFCORE_RNAVAR:RNAVAR:FASTQ_ALIGN_STAR:STAR_ALIGN (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:FASTQ_ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS_GENOME:SAMTOOLS_SORT (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:FASTQ_ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS_GENOME:SAMTOOLS_INDEX (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:BAM_MARKDUPLICATES_PICARD:PICARD_MARKDUPLICATES (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:BAM_MARKDUPLICATES_PICARD:SAMTOOLS_INDEX (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:FASTQ_ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS_GENOME:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:FASTQ_ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS_GENOME:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:FASTQ_ALIGN_STAR:BAM_SORT_STATS_SAMTOOLS_GENOME:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_2scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_1scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_3scattered)NFCORE_RNAVAR:RNAVAR:BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_FLAGSTAT (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_IDXSTATS (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_4scattered)NFCORE_RNAVAR:RNAVAR:BAM_MARKDUPLICATES_PICARD:BAM_STATS_SAMTOOLS:SAMTOOLS_STATS (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_5scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_6scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_7scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_8scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_9scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_10scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_12scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_11scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_13scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_14scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_16scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_15scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_17scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_18scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_20scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_19scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_21scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_22scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_23scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_24scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:GATK4_SPLITNCIGARREADS (POC-201-TP1_25scattered)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:SAMTOOLS_MERGE (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:SPLITNCIGAR:SAMTOOLS_INDEX (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_1scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_2scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_3scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_4scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_5scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_6scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_7scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_8scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_10scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_9scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_11scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_12scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_14scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_13scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_15scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_16scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_18scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_17scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_20scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_19scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_21scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_22scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_23scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_24scattered)NFCORE_RNAVAR:RNAVAR:GATK4_HAPLOTYPECALLER (POC-201-TP1_25scattered)NFCORE_RNAVAR:RNAVAR:GATK4_MERGEVCFS (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:TABIX (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:GATK4_VARIANTFILTRATION (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:ENSEMBLVEP_VEP (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:ENSEMBLVEP_VEP (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:ENSEMBLVEP_VEP (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:TABIX_TABIX (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:TABIX_TABIX (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:TABIX_TABIX (POC-201-TP1)NFCORE_RNAVAR:RNAVAR:MULTIQCNFCORE_RNAVAR:RNAVAR:MULTIQCNFCORE_RNAVAR:RNAVAR:MULTIQC