Nextflow workflow report

[sad_banach]

Workflow execution completed successfully!
Run times
21-Apr-2025 10:32:34 - 21-Apr-2025 12:26:39 (duration: 1h 54m 5s)
  1262 succeeded  
  0 cached  
  0 ignored  
  0 failed  
Nextflow command
nextflow run nf-core/rnaseq -resume -c /gscratch/srlab/nextflow/uw_hyak_srlab.config --input /gscratch/scrubbed/strigg/analyses/20250421_RNAseq/samplesheet.csv --outdir /gscratch/scrubbed/strigg/analyses/20250421_RNAseq --gtf /gscratch/srlab/strigg/GENOMES/Pocillopora_meandrina_HIv1.genes-validated.gtf --gff /gscratch/srlab/strigg/GENOMES/Pocillopora_meandrina_HIv1.genes-validated.gff.gz --fasta /gscratch/srlab/strigg/GENOMES/Pocillopora_meandrina_HIv1.assembly.fasta --skip_trimming --aligner star_salmon --skip_pseudo_alignment --multiqc_title Pmeandrina_RNAseq --deseq2_vst
CPU-Hours
435.3
Launch directory
/mmfs1/gscratch/scrubbed/strigg/analyses/20250421_RNAseq
Work directory
/mmfs1/gscratch/scrubbed/strigg/analyses/20250421_RNAseq/work
Project directory
/mmfs1/home/strigg/.nextflow/assets/nf-core/rnaseq
Script name
main.nf
Script ID
85c9b75b8bdc95677d64453c279377bf
Workflow session
9e849a2b-0ffe-4589-bdb2-42801cb91993
Workflow repository
https://github.com/nf-core/rnaseq, revision master (commit hash b96a75361a4f1d49aa969a2b1c68e3e607de06e8)
Workflow profile
standard
Nextflow version
version 24.10.5, build 5935 (04-03-2025 17:55 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)