Sample Total Reads Total Passed QC Mapped Secondary Alignments Duplicates Paired in Sequencing Properly Paired Self and mate mapped Singletons Mate mapped to diff chr Diff chr (mapQ >= 5) POC-201-TP1 33.124974 33.124974 33.124974 3.405461 0.0 29.719513 29.719246 29.719246 0.000267 0.0 0.0 POC-201-TP2 35.341955999999996 35.341955999999996 35.341955999999996 4.880565 16.150812 30.461391 30.461214 30.461214 0.000177 0.0 0.0 POC-201-TP3 16.099774999999998 16.099774999999998 16.099774999999998 1.8810449999999999 8.5459 14.218729999999999 14.21857 14.21857 0.00015999999999999999 0.0 0.0 POC-219-TP1 32.677248999999996 32.677248999999996 32.677248999999996 3.493769 14.238741 29.18348 29.183239999999998 29.183239999999998 0.00023999999999999998 0.0 0.0 POC-219-TP2 28.643348999999997 28.643348999999997 28.643348999999997 3.1753609999999997 0.0 25.467988 25.467788 25.467788 0.00019999999999999998 0.0 0.0 POC-219-TP3 8.336961 8.336961 8.336961 0.7558199999999999 5.041593 7.581141 7.58102 7.58102 0.000121 0.0 0.0 POC-219-TP4 25.035531 25.035531 25.035531 2.717931 0.0 22.3176 22.317366 22.317366 0.000234 0.0 0.0 POC-222-TP1 33.137889 33.137889 33.137889 3.4132 12.967505 29.724688999999998 29.72449 29.72449 0.00019899999999999999 0.0 0.0 POC-222-TP2 34.990308 34.990308 34.990308 3.8516359999999996 0.0 31.138672 31.13841 31.13841 0.00026199999999999997 0.0 0.0 POC-222-TP3 38.943871 38.943871 38.943871 4.219624 0.0 34.724247 34.723956 34.723956 0.00029099999999999997 0.0 0.0 POC-222-TP4 26.635495 26.635495 26.635495 2.825399 0.0 23.810095999999998 23.809768 23.809768 0.000328 0.0 0.0 POC-255-TP1 29.697706999999998 29.697706999999998 29.697706999999998 2.78166 10.904591 26.916047 26.915817999999998 26.915817999999998 0.00022899999999999998 0.0 0.0 POC-255-TP2 31.909789 31.909789 31.909789 3.4596 0.0 28.450188999999998 28.44992 28.44992 0.000269 0.0 0.0 POC-255-TP3 28.107347999999998 28.107347999999998 28.107347999999998 3.4365099999999997 17.995984999999997 24.670838 24.670607999999998 24.670607999999998 0.00022999999999999998 0.0 0.0 POC-255-TP4 33.595774999999996 33.595774999999996 33.595774999999996 3.4902189999999997 13.322967 30.105556 30.10532 30.10532 0.000236 0.0 0.0 POC-259-TP1 26.402732 26.402732 26.402732 2.9614059999999998 9.560247 23.441326 23.44115 23.44115 0.000176 0.0 0.0 POC-259-TP2 31.783496999999997 31.783496999999997 31.783496999999997 3.875241 0.0 27.908255999999998 27.90804 27.90804 0.000216 0.0 0.0 POC-259-TP3 33.41982 33.41982 33.41982 3.2284089999999996 0.0 30.191411 30.191098 30.191098 0.00031299999999999996 0.0 0.0 POC-259-TP4 31.932299999999998 31.932299999999998 31.932299999999998 3.257882 13.44323 28.674418 28.674052 28.674052 0.000366 0.0 0.0 POC-40-TP1 30.359406 30.359406 30.359406 3.3060799999999997 13.784799 27.053326 27.053086 27.053086 0.00023999999999999998 0.0 0.0 POC-40-TP2 34.997495 34.997495 34.997495 3.52366 0.0 31.473834999999998 31.473585999999997 31.473585999999997 0.000249 0.0 0.0 POC-40-TP3 34.581803 34.581803 34.581803 4.064661 16.065182999999998 30.517142 30.516887999999998 30.516887999999998 0.000254 0.0 0.0 POC-40-TP4 32.584956999999996 32.584956999999996 32.584956999999996 3.149148 0.0 29.435809 29.435513999999998 29.435513999999998 0.00029499999999999996 0.0 0.0 POC-42-TP1 29.715059999999998 29.715059999999998 29.715059999999998 3.176444 0.0 26.538615999999998 26.5383 26.5383 0.000316 0.0 0.0 POC-42-TP2 36.619026 36.619026 36.619026 3.2503509999999998 18.471781 33.368674999999996 33.368314 33.368314 0.000361 0.0 0.0 POC-42-TP3 32.531163 32.531163 32.531163 3.233292 0.0 29.297870999999997 29.297615999999998 29.297615999999998 0.00025499999999999996 0.0 0.0 POC-42-TP4 21.146185 21.146185 21.146185 2.3596399999999997 0.0 18.786545 18.786265999999998 18.786265999999998 0.000279 0.0 0.0 POC-52-TP1 6.114325 6.114325 6.114325 0.6757529999999999 0.0 5.438572 5.438324 5.438324 0.000248 0.0 0.0 POC-52-TP2 33.919173 33.919173 33.919173 3.4313719999999996 18.315027 30.487800999999997 30.487555999999998 30.487555999999998 0.000245 0.0 0.0 POC-52-TP3 27.956653 27.956653 27.956653 2.7266909999999998 13.328978999999999 25.229962 25.229782 25.229782 0.00017999999999999998 0.0 0.0 POC-52-TP4 29.963497 29.963497 29.963497 3.1191079999999998 0.0 26.844389 26.844189999999998 26.844189999999998 0.00019899999999999999 0.0 0.0 POC-53-TP1 31.286645 31.286645 31.286645 3.4018189999999997 13.708357999999999 27.884826 27.884586 27.884586 0.00023999999999999998 0.0 0.0 POC-53-TP2 30.123645 30.123645 30.123645 3.199319 13.420083 26.924325999999997 26.92412 26.92412 0.000206 0.0 0.0 POC-53-TP3 33.874192 33.874192 33.874192 3.5937639999999997 17.401524 30.280427999999997 30.280184 30.280184 0.000244 0.0 0.0 POC-53-TP4 26.206588 26.206588 26.206588 2.3689459999999998 11.527892999999999 23.837642 23.837456 23.837456 0.000186 0.0 0.0 POC-57-TP1 31.122574999999998 31.122574999999998 31.122574999999998 3.5625579999999997 0.0 27.560017 27.559763999999998 27.559763999999998 0.00025299999999999997 0.0 0.0 POC-57-TP2 26.233389 26.233389 26.233389 3.104205 12.359874999999999 23.129184 23.128852 23.128852 0.000332 0.0 0.0 POC-57-TP3 37.602554999999995 37.602554999999995 37.602554999999995 4.253147 16.180715 33.349408 33.349168 33.349168 0.00023999999999999998 0.0 0.0 POC-57-TP4 36.062937999999995 36.062937999999995 36.062937999999995 3.443964 0.0 32.618974 32.618739999999995 32.618739999999995 0.000234 0.0 0.0