Sample	total_passed	total_failed	secondary_passed	secondary_failed	supplementary_passed	supplementary_failed	duplicates_passed	duplicates_failed	mapped_passed	mapped_failed	mapped_passed_pct	mapped_failed_pct	paired in sequencing_passed	paired in sequencing_failed	read1_passed	read1_failed	read2_passed	read2_failed	properly paired_passed	properly paired_failed	properly paired_passed_pct	properly paired_failed_pct	with itself and mate mapped_passed	with itself and mate mapped_failed	singletons_passed	singletons_failed	singletons_passed_pct	singletons_failed_pct	with mate mapped to a different chr_passed	with mate mapped to a different chr_failed	with mate mapped to a different chr (mapQ >= 5)_passed	with mate mapped to a different chr (mapQ >= 5)_failed	flagstat_total
POC-201-TP1	33124974	0	3405461	0	0	0	0	0	33124974	0	100.0	nan	29719513	0	14859851	0	14859662	0	29719246	0	100.0	nan	29719246	0	267	0	0.0	nan	0	0	0	0	33124974
POC-201-TP2	35341956	0	4880565	0	0	0	16150812	0	35341956	0	100.0	nan	30461391	0	15230762	0	15230629	0	30461214	0	100.0	nan	30461214	0	177	0	0.0	nan	0	0	0	0	35341956
POC-201-TP3	16099775	0	1881045	0	0	0	8545900	0	16099775	0	100.0	nan	14218730	0	7109402	0	7109328	0	14218570	0	100.0	nan	14218570	0	160	0	0.0	nan	0	0	0	0	16099775
POC-219-TP1	32677249	0	3493769	0	0	0	14238741	0	32677249	0	100.0	nan	29183480	0	14591842	0	14591638	0	29183240	0	100.0	nan	29183240	0	240	0	0.0	nan	0	0	0	0	32677249
POC-219-TP2	28643349	0	3175361	0	0	0	0	0	28643349	0	100.0	nan	25467988	0	12734050	0	12733938	0	25467788	0	100.0	nan	25467788	0	200	0	0.0	nan	0	0	0	0	28643349
POC-219-TP3	8336961	0	755820	0	0	0	5041593	0	8336961	0	100.0	nan	7581141	0	3790573	0	3790568	0	7581020	0	100.0	nan	7581020	0	121	0	0.0	nan	0	0	0	0	8336961
POC-219-TP4	25035531	0	2717931	0	0	0	0	0	25035531	0	100.0	nan	22317600	0	11158878	0	11158722	0	22317366	0	100.0	nan	22317366	0	234	0	0.0	nan	0	0	0	0	25035531
POC-222-TP1	33137889	0	3413200	0	0	0	12967505	0	33137889	0	100.0	nan	29724689	0	14862410	0	14862279	0	29724490	0	100.0	nan	29724490	0	199	0	0.0	nan	0	0	0	0	33137889
POC-222-TP2	34990308	0	3851636	0	0	0	0	0	34990308	0	100.0	nan	31138672	0	15569422	0	15569250	0	31138410	0	100.0	nan	31138410	0	262	0	0.0	nan	0	0	0	0	34990308
POC-222-TP3	38943871	0	4219624	0	0	0	0	0	38943871	0	100.0	nan	34724247	0	17362199	0	17362048	0	34723956	0	100.0	nan	34723956	0	291	0	0.0	nan	0	0	0	0	38943871
POC-222-TP4	26635495	0	2825399	0	0	0	0	0	26635495	0	100.0	nan	23810096	0	11905126	0	11904970	0	23809768	0	100.0	nan	23809768	0	328	0	0.0	nan	0	0	0	0	26635495
POC-255-TP1	29697707	0	2781660	0	0	0	10904591	0	29697707	0	100.0	nan	26916047	0	13458088	0	13457959	0	26915818	0	100.0	nan	26915818	0	229	0	0.0	nan	0	0	0	0	29697707
POC-255-TP2	31909789	0	3459600	0	0	0	0	0	31909789	0	100.0	nan	28450189	0	14225174	0	14225015	0	28449920	0	100.0	nan	28449920	0	269	0	0.0	nan	0	0	0	0	31909789
POC-255-TP3	28107348	0	3436510	0	0	0	17995985	0	28107348	0	100.0	nan	24670838	0	12335446	0	12335392	0	24670608	0	100.0	nan	24670608	0	230	0	0.0	nan	0	0	0	0	28107348
POC-255-TP4	33595775	0	3490219	0	0	0	13322967	0	33595775	0	100.0	nan	30105556	0	15052852	0	15052704	0	30105320	0	100.0	nan	30105320	0	236	0	0.0	nan	0	0	0	0	33595775
POC-259-TP1	26402732	0	2961406	0	0	0	9560247	0	26402732	0	100.0	nan	23441326	0	11720726	0	11720600	0	23441150	0	100.0	nan	23441150	0	176	0	0.0	nan	0	0	0	0	26402732
POC-259-TP2	31783497	0	3875241	0	0	0	0	0	31783497	0	100.0	nan	27908256	0	13954189	0	13954067	0	27908040	0	100.0	nan	27908040	0	216	0	0.0	nan	0	0	0	0	31783497
POC-259-TP3	33419820	0	3228409	0	0	0	0	0	33419820	0	100.0	nan	30191411	0	15095791	0	15095620	0	30191098	0	100.0	nan	30191098	0	313	0	0.0	nan	0	0	0	0	33419820
POC-259-TP4	31932300	0	3257882	0	0	0	13443230	0	31932300	0	100.0	nan	28674418	0	14337290	0	14337128	0	28674052	0	100.0	nan	28674052	0	366	0	0.0	nan	0	0	0	0	31932300
POC-40-TP1	30359406	0	3306080	0	0	0	13784799	0	30359406	0	100.0	nan	27053326	0	13526727	0	13526599	0	27053086	0	100.0	nan	27053086	0	240	0	0.0	nan	0	0	0	0	30359406
POC-40-TP2	34997495	0	3523660	0	0	0	0	0	34997495	0	100.0	nan	31473835	0	15737005	0	15736830	0	31473586	0	100.0	nan	31473586	0	249	0	0.0	nan	0	0	0	0	34997495
POC-40-TP3	34581803	0	4064661	0	0	0	16065183	0	34581803	0	100.0	nan	30517142	0	15258638	0	15258504	0	30516888	0	100.0	nan	30516888	0	254	0	0.0	nan	0	0	0	0	34581803
POC-40-TP4	32584957	0	3149148	0	0	0	0	0	32584957	0	100.0	nan	29435809	0	14717986	0	14717823	0	29435514	0	100.0	nan	29435514	0	295	0	0.0	nan	0	0	0	0	32584957
POC-42-TP1	29715060	0	3176444	0	0	0	0	0	29715060	0	100.0	nan	26538616	0	13269392	0	13269224	0	26538300	0	100.0	nan	26538300	0	316	0	0.0	nan	0	0	0	0	29715060
POC-42-TP2	36619026	0	3250351	0	0	0	18471781	0	36619026	0	100.0	nan	33368675	0	16684453	0	16684222	0	33368314	0	100.0	nan	33368314	0	361	0	0.0	nan	0	0	0	0	36619026
POC-42-TP3	32531163	0	3233292	0	0	0	0	0	32531163	0	100.0	nan	29297871	0	14649032	0	14648839	0	29297616	0	100.0	nan	29297616	0	255	0	0.0	nan	0	0	0	0	32531163
POC-42-TP4	21146185	0	2359640	0	0	0	0	0	21146185	0	100.0	nan	18786545	0	9393337	0	9393208	0	18786266	0	100.0	nan	18786266	0	279	0	0.0	nan	0	0	0	0	21146185
POC-52-TP1	6114325	0	675753	0	0	0	0	0	6114325	0	100.0	nan	5438572	0	2719282	0	2719290	0	5438324	0	100.0	nan	5438324	0	248	0	0.0	nan	0	0	0	0	6114325
POC-52-TP2	33919173	0	3431372	0	0	0	18315027	0	33919173	0	100.0	nan	30487801	0	15243999	0	15243802	0	30487556	0	100.0	nan	30487556	0	245	0	0.0	nan	0	0	0	0	33919173
POC-52-TP3	27956653	0	2726691	0	0	0	13328979	0	27956653	0	100.0	nan	25229962	0	12615054	0	12614908	0	25229782	0	100.0	nan	25229782	0	180	0	0.0	nan	0	0	0	0	27956653
POC-52-TP4	29963497	0	3119108	0	0	0	0	0	29963497	0	100.0	nan	26844389	0	13422259	0	13422130	0	26844190	0	100.0	nan	26844190	0	199	0	0.0	nan	0	0	0	0	29963497
POC-53-TP1	31286645	0	3401819	0	0	0	13708358	0	31286645	0	100.0	nan	27884826	0	13942486	0	13942340	0	27884586	0	100.0	nan	27884586	0	240	0	0.0	nan	0	0	0	0	31286645
POC-53-TP2	30123645	0	3199319	0	0	0	13420083	0	30123645	0	100.0	nan	26924326	0	13462238	0	13462088	0	26924120	0	100.0	nan	26924120	0	206	0	0.0	nan	0	0	0	0	30123645
POC-53-TP3	33874192	0	3593764	0	0	0	17401524	0	33874192	0	100.0	nan	30280428	0	15140280	0	15140148	0	30280184	0	100.0	nan	30280184	0	244	0	0.0	nan	0	0	0	0	33874192
POC-53-TP4	26206588	0	2368946	0	0	0	11527893	0	26206588	0	100.0	nan	23837642	0	11918863	0	11918779	0	23837456	0	100.0	nan	23837456	0	186	0	0.0	nan	0	0	0	0	26206588
POC-57-TP1	31122575	0	3562558	0	0	0	0	0	31122575	0	100.0	nan	27560017	0	13780062	0	13779955	0	27559764	0	100.0	nan	27559764	0	253	0	0.0	nan	0	0	0	0	31122575
POC-57-TP2	26233389	0	3104205	0	0	0	12359875	0	26233389	0	100.0	nan	23129184	0	11564670	0	11564514	0	23128852	0	100.0	nan	23128852	0	332	0	0.0	nan	0	0	0	0	26233389
POC-57-TP3	37602555	0	4253147	0	0	0	16180715	0	37602555	0	100.0	nan	33349408	0	16674784	0	16674624	0	33349168	0	100.0	nan	33349168	0	240	0	0.0	nan	0	0	0	0	37602555
POC-57-TP4	36062938	0	3443964	0	0	0	0	0	36062938	0	100.0	nan	32618974	0	16309575	0	16309399	0	32618740	0	100.0	nan	32618740	0	234	0	0.0	nan	0	0	0	0	36062938