10.1093/bioinformatics/btw354 # MultiQC 10.1093/bioinformatics/btv566 # qualimap 10.1093/bioinformatics/bts503 # qualimap 10.1093/bioinformatics/bts356 # rseqc 10.1093/bioinformatics/btp352 # samtools 10.1093/bioinformatics/bts635 # star