Module Section Sample Name Source Bismark alignment POR-216-TP1.POR-216-TP1_R1_001 /gscratch/scrubbed/srlab/nxf.pwtZryrM1m/8/POR-216-TP1.POR-216-TP1_R1_001.fastp-trim_bismark_bt2_PE_report.txt Bismark deduplication POR-216-TP1.POR-216-TP1_R1_001 /gscratch/scrubbed/srlab/nxf.pwtZryrM1m/7/POR-216-TP1.POR-216-TP1_R1_001.fastp-trim_bismark_bt2_pe.deduplication_report.txt Bismark methylation_extraction POR-216-TP1.POR-216-TP1_R1_001 /gscratch/scrubbed/srlab/nxf.pwtZryrM1m/10/POR-216-TP1.POR-216-TP1_R1_001.fastp-trim_bismark_bt2_pe.deduplicated_splitting_report.txt Bismark m_bias POR-216-TP1.POR-216-TP1_R1_001 /gscratch/scrubbed/srlab/nxf.pwtZryrM1m/9/POR-216-TP1.POR-216-TP1_R1_001.fastp-trim_bismark_bt2_pe.deduplicated.M-bias.txt FastQC all_sections POR-216-TP1_2 /gscratch/scrubbed/srlab/nxf.pwtZryrM1m/6/POR-216-TP1_2_fastqc.zip FastQC all_sections POR-216-TP1_1 /gscratch/scrubbed/srlab/nxf.pwtZryrM1m/3/POR-216-TP1_1_fastqc.zip