Nextflow workflow report

[special_brenner] (resumed run)

Workflow execution completed successfully. One or more tasks reported an error condition.
Run times
16-Jun-2025 06:09:21 - 16-Jun-2025 18:12:18 (duration: 12h 2m 57s)
  187 succeeded  
  55 cached  
  9 ignored  
  93 failed  
Nextflow command
nextflow run nf-core/methylseq -c /gscratch/srlab/strigg/bin/uw_hyak_srlab.config --input /gscratch/scrubbed/strigg/analyses/20250529_methylseq/samplesheet.csv --outdir /gscratch/scrubbed/strigg/analyses/20250605_methylseq --fasta /gscratch/srlab/strigg/GENOMES/Porites_evermanni_v1.fa --em_seq -resume -with-report nf_report.html -with-trace -with-timeline nf_timeline.html --skip_trimming --nomeseq
CPU-Hours
2'817.7 (7.4% cached, 20.8% failed)
Launch directory
/mmfs1/gscratch/scrubbed/strigg/analyses/20250605_methylseq
Work directory
/mmfs1/gscratch/scrubbed/strigg/analyses/20250605_methylseq/work
Project directory
/mmfs1/home/strigg/.nextflow/assets/nf-core/methylseq
Script name
main.nf
Script ID
5d80ec838a261829b26e2dd196e415b4
Workflow session
53958785-c0fb-4fb9-81eb-fede2eb70b2e
Workflow repository
https://github.com/nf-core/methylseq, revision master (commit hash 4415e90a60faba40ccefd4c847666d28688a86ee)
Workflow profile
standard
Nextflow version
version 24.10.6, build 5937 (23-04-2025 16:53 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)