STAR version=2.7.11b STAR compilation time,server,dir=2025-01-09T12:32:06+0000 :/opt/conda/conda-bld/star_1736425784849/work/source ##### Command Line: /opt/conda/bin/STAR-avx2 --genomeDir star --readFilesIn input1/ACR-173-TP3_1.merged.fastq.gz input2/ACR-173-TP3_2.merged.fastq.gz --runThreadN 12 --outFileNamePrefix ACR-173-TP3. --sjdbGTFfile Apulchra-genome.gtf --outSAMattrRGline ID:ACR-173-TP3 SM:ACR-173-TP3 PL:illumina --outSAMtype BAM SortedByCoordinate --readFilesCommand zcat --sjdbOverhang 149 --twopassMode Basic --outBAMsortingBinsN 50 --limitOutSJcollapsed 1000000 ##### Initial USER parameters from Command Line: outFileNamePrefix ACR-173-TP3. ###### All USER parameters from Command Line: genomeDir star ~RE-DEFINED readFilesIn input1/ACR-173-TP3_1.merged.fastq.gz input2/ACR-173-TP3_2.merged.fastq.gz ~RE-DEFINED runThreadN 12 ~RE-DEFINED outFileNamePrefix ACR-173-TP3. ~RE-DEFINED sjdbGTFfile Apulchra-genome.gtf ~RE-DEFINED outSAMattrRGline ID:ACR-173-TP3 SM:ACR-173-TP3 PL:illumina ~RE-DEFINED outSAMtype BAM SortedByCoordinate ~RE-DEFINED readFilesCommand zcat ~RE-DEFINED sjdbOverhang 149 ~RE-DEFINED twopassMode Basic ~RE-DEFINED outBAMsortingBinsN 50 ~RE-DEFINED limitOutSJcollapsed 1000000 ~RE-DEFINED ##### Finished reading parameters from all sources ##### Final user re-defined parameters-----------------: runThreadN 12 genomeDir star readFilesIn input1/ACR-173-TP3_1.merged.fastq.gz input2/ACR-173-TP3_2.merged.fastq.gz readFilesCommand zcat limitOutSJcollapsed 1000000 outFileNamePrefix ACR-173-TP3. outSAMtype BAM SortedByCoordinate outSAMattrRGline ID:ACR-173-TP3 SM:ACR-173-TP3 PL:illumina outBAMsortingBinsN 50 sjdbGTFfile Apulchra-genome.gtf sjdbOverhang 149 twopassMode Basic ------------------------------- ##### Final effective command line: /opt/conda/bin/STAR-avx2 --runThreadN 12 --genomeDir star --readFilesIn input1/ACR-173-TP3_1.merged.fastq.gz input2/ACR-173-TP3_2.merged.fastq.gz --readFilesCommand zcat --limitOutSJcollapsed 1000000 --outFileNamePrefix ACR-173-TP3. --outSAMtype BAM SortedByCoordinate --outSAMattrRGline ID:ACR-173-TP3 SM:ACR-173-TP3 PL:illumina --outBAMsortingBinsN 50 --sjdbGTFfile Apulchra-genome.gtf --sjdbOverhang 149 --twopassMode Basic ---------------------------------------- Number of fastq files for each mate = 1 Input read files for mate 1 : -rw-r--r-- 1 strigg all 1220028408 Jul 22 10:43 input1/ACR-173-TP3_1.merged.fastq.gz readsCommandsFile: exec > "ACR-173-TP3._STARtmp/tmp.fifo.read1" echo FILE 0 zcat "input1/ACR-173-TP3_1.merged.fastq.gz" Input read files for mate 2 : -rw-r--r-- 1 strigg all 1210339762 Jul 22 10:43 input2/ACR-173-TP3_2.merged.fastq.gz readsCommandsFile: exec > "ACR-173-TP3._STARtmp/tmp.fifo.read2" echo FILE 0 zcat "input2/ACR-173-TP3_2.merged.fastq.gz" WARNING --outSAMattrRG defines a read group, therefore STAR will output RG attribute ParametersSolo: --soloCellFilterType CellRanger2.2 filtering parameters: 3000 0.99 10 WARNING: --limitBAMsortRAM=0, will use genome size as RAM limit for BAM sorting Finished loading and checking parameters Reading genome generation parameters: ### /opt/conda/bin/STAR-avx2 --runMode genomeGenerate --runThreadN 12 --genomeDir star/ --genomeFastaFiles Apulcra-genome.fa --genomeSAindexNbases 13 --limitGenomeGenerateRAM 77209411328 --sjdbGTFfile Apulchra-genome.gtf --sjdbOverhang 149 ### GstrandBit=32 versionGenome 2.7.4a ~RE-DEFINED genomeType Full ~RE-DEFINED genomeFastaFiles Apulcra-genome.fa ~RE-DEFINED genomeSAindexNbases 13 ~RE-DEFINED genomeChrBinNbits 18 ~RE-DEFINED genomeSAsparseD 1 ~RE-DEFINED genomeTransformType None ~RE-DEFINED genomeTransformVCF - ~RE-DEFINED sjdbOverhang 149 ~RE-DEFINED sjdbFileChrStartEnd - ~RE-DEFINED sjdbGTFfile Apulchra-genome.gtf ~RE-DEFINED sjdbGTFchrPrefix - ~RE-DEFINED sjdbGTFfeatureExon exon ~RE-DEFINED sjdbGTFtagExonParentTranscripttranscript_id ~RE-DEFINED sjdbGTFtagExonParentGene gene_id ~RE-DEFINED sjdbInsertSave Basic ~RE-DEFINED genomeFileSizes 601722042 4682149679 ~RE-DEFINED Genome version is compatible with current STAR Number of real (reference) chromosomes= 174 1 ntLink_7 182921 0 2 ntLink_8 37517065 262144 3 ntLink_0 96579 38010880 4 ntLink_1 163215 38273024 5 ntLink_2 399487 38535168 6 ntLink_3 131493 39059456 7 ntLink_4 304137 39321600 8 ntLink_6 23310787 39845888 9 ptg000001l 21642937 63176704 10 ptg000002l 16169064 84934656 11 ptg000004l 15492464 101187584 12 ptg000005l 1353984 116916224 13 ptg000006l 2099453 118489088 14 ptg000007l 12295979 120848384 15 ptg000008l 38433046 133169152 16 ptg000009l 19096111 171704320 17 ptg000010l 2424896 190840832 18 ptg000011l 13936008 193462272 19 ptg000012l 20103072 207618048 20 ptg000015l 14997216 227803136 21 ptg000016l 13007972 243007488 22 ptg000017l 13021168 256114688 23 ptg000018l 16820986 269221888 24 ptg000019l 6029878 286261248 25 ptg000020l 17861421 292552704 26 ptg000021l 20990097 310640640 27 ptg000022l 9976853 331874304 28 ptg000023l 45111900 342097920 29 ptg000024l 12381367 387448832 30 ptg000025l 21443205 400031744 31 ptg000026l 14742043 421527552 32 ptg000027l 16268372 436469760 33 ptg000028l 618624 452984832 34 ptg000029c 1802667 453771264 35 ptg000030l 3582912 455606272 36 ptg000031l 15849266 459276288 37 ptg000033l 2625722 475267072 38 ptg000034l 3359966 478150656 39 ptg000035l 10246667 481558528 40 ptg000036l 6407290 492044288 41 ptg000037l 391792 498597888 42 ptg000038l 422940 499122176 43 ptg000039l 1139508 499646464 44 ptg000040l 507266 500957184 45 ptg000043l 75298 501481472 46 ptg000045l 58100 501743616 47 ptg000046l 39690 502005760 48 ptg000047l 12075275 502267904 49 ptg000048l 76543 514588672 50 ptg000049l 2460718 514850816 51 ptg000050l 26409 517472256 52 ptg000051l 421353 517734400 53 ptg000052l 52716 518258688 54 ptg000053l 71647 518520832 55 ptg000054l 36139 518782976 56 ptg000055l 50643 519045120 57 ptg000056l 59211 519307264 58 ptg000057l 40058 519569408 59 ptg000059l 1573639 519831552 60 ptg000060c 88608 521666560 61 ptg000061l 250273 521928704 62 ptg000063l 30461 522190848 63 ptg000064l 127137 522452992 64 ptg000065l 49781 522715136 65 ptg000066l 66470 522977280 66 ptg000067l 105327 523239424 67 ptg000069l 259918 523501568 68 ptg000070l 189610 523763712 69 ptg000072c 408928 524025856 70 ptg000073l 409134 524550144 71 ptg000074l 12360 525074432 72 ptg000075l 54260 525336576 73 ptg000076l 137238 525598720 74 ptg000077l 42585 525860864 75 ptg000078l 31348 526123008 76 ptg000079l 27486 526385152 77 ptg000080l 40228 526647296 78 ptg000081l 145853 526909440 79 ptg000082l 65340 527171584 80 ptg000083l 120370 527433728 81 ptg000085l 151873 527695872 82 ptg000086l 104674 527958016 83 ptg000087l 95515 528220160 84 ptg000088l 97007 528482304 85 ptg000089l 46533 528744448 86 ptg000090l 49583 529006592 87 ptg000092l 29088 529268736 88 ptg000093l 36876 529530880 89 ptg000094l 36924 529793024 90 ptg000095l 40342 530055168 91 ptg000096l 56507 530317312 92 ptg000097l 58413 530579456 93 ptg000098l 55189 530841600 94 ptg000099l 50694 531103744 95 ptg000100l 47395 531365888 96 ptg000101l 31218 531628032 97 ptg000102l 64621 531890176 98 ptg000105l 83338 532152320 99 ptg000106l 40480 532414464 100 ptg000107l 62728 532676608 101 ptg000108l 75446 532938752 102 ptg000109l 39719 533200896 103 ptg000112l 35652 533463040 104 ptg000113l 59661 533725184 105 ptg000114l 51246 533987328 106 ptg000115l 42162 534249472 107 ptg000116l 48591 534511616 108 ptg000117l 30111 534773760 109 ptg000118l 34477 535035904 110 ptg000119l 15671 535298048 111 ptg000120l 31425 535560192 112 ptg000121l 50840 535822336 113 ptg000122l 47703 536084480 114 ptg000123l 44572 536346624 115 ptg000124l 54952 536608768 116 ptg000125l 18991 536870912 117 ptg000126l 31142 537133056 118 ptg000127l 27913 537395200 119 ptg000128l 44614 537657344 120 ptg000129l 33457 537919488 121 ptg000130l 35903 538181632 122 ptg000131l 37538 538443776 123 ptg000132l 27784 538705920 124 ptg000133l 37210 538968064 125 ptg000134l 84081 539230208 126 ptg000135l 25435 539492352 127 ptg000136l 13191 539754496 128 ptg000137l 40672 540016640 129 ptg000138l 33843 540278784 130 ptg000139l 18485 540540928 131 ptg000140l 29188 540803072 132 ptg000141l 70224 541065216 133 ptg000142l 11144 541327360 134 ptg000144l 19186 541589504 135 ptg000145l 19611 541851648 136 ptg000146l 39083 542113792 137 ptg000147l 26913 542375936 138 ptg000148l 30493 542638080 139 ptg000149l 81168 542900224 140 ptg000151l 114317 543162368 141 ptg000152l 21132 543424512 142 ptg000153l 25874 543686656 143 ptg000154l 34166 543948800 144 ptg000155l 36909 544210944 145 ptg000158l 12923 544473088 146 ptg000159l 21950 544735232 147 ptg000160l 32691 544997376 148 ptg000161l 10386 545259520 149 ptg000162l 10989 545521664 150 ptg000163l 15878 545783808 151 ptg000164l 6816 546045952 152 ptg000165l 24884 546308096 153 ptg000166l 10083 546570240 154 ptg000167l 15185 546832384 155 ptg000168l 13711 547094528 156 ptg000169l 31469 547356672 157 ptg000170l 33255 547618816 158 ptg000171l 41218 547880960 159 ptg000172l 42542 548143104 160 ptg000173l 36190 548405248 161 ptg000174l 27349 548667392 162 ptg000175l 30746 548929536 163 ptg000176l 41371 549191680 164 ptg000177l 44113 549453824 165 ptg000178l 32219 549715968 166 ptg000179l 40805 549978112 167 ptg000180l 6597 550240256 168 ptg000181l 31481 550502400 169 ptg000182l 35644 550764544 170 ptg000183l 26290 551026688 171 ptg000184l 44502 551288832 172 ptg000185l 34611 551550976 173 ptg000186l 29103 551813120 174 ptg000187l 18072 552075264 Started loading the genome: Tue Jul 22 10:46:14 2025 Genome: size given as a parameter = 601722042 SA: size given as a parameter = 4682149679 SAindex: size given as a parameter = 1 Read from SAindex: pGe.gSAindexNbases=13 nSAi=89478484 nGenome=601722042; nSAbyte=4682149679 GstrandBit=32 SA number of indices=1135066588 Shared memory is not used for genomes. Allocated a private copy of the genome. Genome file size: 601722042 bytes; state: good=1 eof=0 fail=0 bad=0 Loading Genome ... done! state: good=1 eof=0 fail=0 bad=0; loaded 601722042 bytes SA file size: 4682149679 bytes; state: good=1 eof=0 fail=0 bad=0 Loading SA ... done! state: good=1 eof=0 fail=0 bad=0; loaded 4682149679 bytes Loading SAindex ... done: 391468491 bytes Finished loading the genome: Tue Jul 22 10:46:18 2025 Processing splice junctions database sjdbN=165166, pGe.sjdbOverhang=149 alignIntronMax=alignMatesGapMax=0, the max intron size will be approximately determined by (2^winBinNbits)*winAnchorDistNbins=589824 Jul 22 10:46:18 Loaded database junctions from the generated genome star//sjdbList.out.tab: 165166 total junctions Jul 22 10:46:18 ..... processing annotations GTF Processing pGe.sjdbGTFfile=Apulchra-genome.gtf, found: 44371 transcripts 209537 exons (non-collapsed) 165166 collapsed junctions Total junctions: 330332 Jul 22 10:46:19 ..... finished GTF processing WARNING: long repeat for junction # 2961 : ntLink_8 15395531 15403356; left shift = 145; right shift = 255 WARNING: long repeat for junction # 8313 : ntLink_8 26294378 26299713; left shift = 28; right shift = 255 WARNING: long repeat for junction # 37689 : ptg000004l 8841471 8842312; left shift = 1; right shift = 255 WARNING: long repeat for junction # 38443 : ptg000004l 12786532 12789319; left shift = 255; right shift = 204 WARNING: long repeat for junction # 41859 : ptg000007l 6539201 6544167; left shift = 255; right shift = 255 WARNING: long repeat for junction # 67331 : ptg000012l 3079551 3085921; left shift = 255; right shift = 255 WARNING: long repeat for junction # 78337 : ptg000017l 753288 753539; left shift = 255; right shift = 25 WARNING: long repeat for junction # 130168 : ptg000025l 12629824 12632238; left shift = 108; right shift = 255 WARNING: long repeat for junction # 146053 : ptg000030l 1465457 1472902; left shift = 255; right shift = 255 WARNING: long repeat for junction # 151731 : ptg000035l 2352691 2357873; left shift = 224; right shift = 255 WARNING: long repeat for junction # 154775 : ptg000035l 8081713 8083258; left shift = 68; right shift = 255 WARNING: long repeat for junction # 168127 : ntLink_8 15395531 15403356; left shift = 145; right shift = 255 WARNING: long repeat for junction # 173479 : ntLink_8 26294378 26299713; left shift = 28; right shift = 255 WARNING: long repeat for junction # 202855 : ptg000004l 8841471 8842312; left shift = 1; right shift = 255 WARNING: long repeat for junction # 203609 : ptg000004l 12786532 12789319; left shift = 255; right shift = 204 WARNING: long repeat for junction # 207025 : ptg000007l 6539201 6544167; left shift = 255; right shift = 255 WARNING: long repeat for junction # 232497 : ptg000012l 3079551 3085921; left shift = 255; right shift = 255 WARNING: long repeat for junction # 243503 : ptg000017l 753288 753539; left shift = 255; right shift = 25 WARNING: long repeat for junction # 295334 : ptg000025l 12629824 12632238; left shift = 108; right shift = 255 WARNING: long repeat for junction # 311219 : ptg000030l 1465457 1472902; left shift = 255; right shift = 255 WARNING: long repeat for junction # 316897 : ptg000035l 2352691 2357873; left shift = 224; right shift = 255 WARNING: long repeat for junction # 319941 : ptg000035l 8081713 8083258; left shift = 68; right shift = 255 Jul 22 10:46:19 Finished preparing junctions Jul 22 10:46:19 ..... inserting junctions into the genome indices Jul 22 10:46:20 Finished SA search: number of new junctions=0, old junctions=165166 Jul 22 10:46:20 Finished sorting SA indicesL nInd=0 Genome size with junctions=601722042 552337408 49384634 GstrandBit1=32 GstrandBit=32 Jul 22 10:46:30 Finished inserting junction indices Jul 22 10:46:31 Finished SAi Jul 22 10:46:31 ..... finished inserting junctions into genome Created thread # 1 Created thread # 2 Created thread # 3 Starting to map file # 0 mate 1: input1/ACR-173-TP3_1.merged.fastq.gz mate 2: input2/ACR-173-TP3_2.merged.fastq.gz Created thread # 4 Created thread # 5 Created thread # 6 Created thread # 7 Created thread # 8 Created thread # 9 Created thread # 10 Created thread # 11 Thread #0 end of input stream, nextChar=-1 Completed: thread #11 Completed: thread #1 Completed: thread #4 Completed: thread #2 Completed: thread #8 Completed: thread #10 Completed: thread #9 Completed: thread #5 Completed: thread #7 Completed: thread #6 Completed: thread #3 Completed: thread #0 Joined thread # 1 Joined thread # 2 Joined thread # 3 Joined thread # 4 Joined thread # 5 Joined thread # 6 Joined thread # 7 Joined thread # 8 Joined thread # 9 Joined thread # 10 Joined thread # 11 Jul 22 10:52:03 Loaded database junctions from the 1st pass file: ACR-173-TP3._STARpass1//SJ.out.tab: 491025 total junctions WARNING: long repeat for junction # 2961 : ntLink_8 15395531 15403356; left shift = 145; right shift = 255 WARNING: long repeat for junction # 8313 : ntLink_8 26294378 26299713; left shift = 28; right shift = 255 WARNING: long repeat for junction # 37689 : ptg000004l 8841471 8842312; left shift = 1; right shift = 255 WARNING: long repeat for junction # 38443 : ptg000004l 12786532 12789319; left shift = 255; right shift = 204 WARNING: long repeat for junction # 41859 : ptg000007l 6539201 6544167; left shift = 255; right shift = 255 WARNING: long repeat for junction # 67331 : ptg000012l 3079551 3085921; left shift = 255; right shift = 255 WARNING: long repeat for junction # 78337 : ptg000017l 753288 753539; left shift = 255; right shift = 25 WARNING: long repeat for junction # 130168 : ptg000025l 12629824 12632238; left shift = 108; right shift = 255 WARNING: long repeat for junction # 146053 : ptg000030l 1465457 1472902; left shift = 255; right shift = 255 WARNING: long repeat for junction # 151731 : ptg000035l 2352691 2357873; left shift = 224; right shift = 255 WARNING: long repeat for junction # 154775 : ptg000035l 8081713 8083258; left shift = 68; right shift = 255 WARNING: long repeat for junction # 168127 : ntLink_8 15395531 15403356; left shift = 145; right shift = 255 WARNING: long repeat for junction # 173479 : ntLink_8 26294378 26299713; left shift = 28; right shift = 255 WARNING: long repeat for junction # 202855 : ptg000004l 8841471 8842312; left shift = 1; right shift = 255 WARNING: long repeat for junction # 203609 : ptg000004l 12786532 12789319; left shift = 255; right shift = 204 WARNING: long repeat for junction # 207025 : ptg000007l 6539201 6544167; left shift = 255; right shift = 255 WARNING: long repeat for junction # 232497 : ptg000012l 3079551 3085921; left shift = 255; right shift = 255 WARNING: long repeat for junction # 243503 : ptg000017l 753288 753539; left shift = 255; right shift = 25 WARNING: long repeat for junction # 295334 : ptg000025l 12629824 12632238; left shift = 108; right shift = 255 WARNING: long repeat for junction # 311219 : ptg000030l 1465457 1472902; left shift = 255; right shift = 255 WARNING: long repeat for junction # 316897 : ptg000035l 2352691 2357873; left shift = 224; right shift = 255 WARNING: long repeat for junction # 319941 : ptg000035l 8081713 8083258; left shift = 68; right shift = 255 WARNING: long repeat for junction # 333808 : ntLink_8 15395531 15403356; left shift = 145; right shift = 255 WARNING: long repeat for junction # 368577 : ptg000004l 8841471 8842312; left shift = 1; right shift = 255 WARNING: long repeat for junction # 397194 : ptg000012l 3079551 3085921; left shift = 255; right shift = 255 WARNING: long repeat for junction # 407992 : ptg000017l 753288 753539; left shift = 255; right shift = 25 WARNING: long repeat for junction # 458129 : ptg000025l 12629824 12632238; left shift = 108; right shift = 255 WARNING: long repeat for junction # 473546 : ptg000030l 1465457 1472902; left shift = 255; right shift = 255 WARNING: long repeat for junction # 481772 : ptg000035l 8081713 8083258; left shift = 68; right shift = 255 Jul 22 10:52:03 Finished preparing junctions Jul 22 10:52:03 ..... inserting junctions into the genome indices Jul 22 10:52:11 Finished SA search: number of new junctions=60123, old junctions=165166 Jul 22 10:52:19 Finished sorting SA indicesL nInd=35833236 Genome size with junctions=619698819 552337408 67361411 GstrandBit1=32 GstrandBit=32 Jul 22 10:52:30 Finished inserting junction indices Jul 22 10:52:33 Finished SAi Jul 22 10:52:33 ..... finished inserting junctions into genome Input read files for mate 1 : -rw-r--r-- 1 strigg all 1220028408 Jul 22 10:43 input1/ACR-173-TP3_1.merged.fastq.gz readsCommandsFile: exec > "ACR-173-TP3._STARtmp/tmp.fifo.read1" echo FILE 0 zcat "input1/ACR-173-TP3_1.merged.fastq.gz" Input read files for mate 2 : -rw-r--r-- 1 strigg all 1210339762 Jul 22 10:43 input2/ACR-173-TP3_2.merged.fastq.gz readsCommandsFile: exec > "ACR-173-TP3._STARtmp/tmp.fifo.read2" echo FILE 0 zcat "input2/ACR-173-TP3_2.merged.fastq.gz" Created thread # 1 Starting to map file # 0 mate 1: input1/ACR-173-TP3_1.merged.fastq.gz mate 2: input2/ACR-173-TP3_2.merged.fastq.gz Created thread # 2 Created thread # 3 Created thread # 4 Created thread # 5 Created thread # 6 Created thread # 7 Created thread # 8 Created thread # 9 Created thread # 10 Created thread # 11 BAM sorting: 150295 mapped reads BAM sorting bins genomic start loci: 1 1 18420015 2 1 24724181 3 1 30964967 4 7 1495360 5 7 7990114 6 7 11154260 7 7 22773822 8 8 15740878 9 9 5649394 10 9 9081278 11 9 15498753 12 10 6613573 13 13 2497946 14 14 1185214 15 14 8239443 16 14 20022457 17 15 919202 18 15 4231066 19 15 14168903 20 17 1563224 21 17 12637112 22 18 10664856 23 20 8625685 24 21 3132429 25 21 8593578 26 22 5021159 27 22 10313992 28 24 130442 29 24 5665713 30 25 14127174 31 25 20892696 32 27 933270 33 27 23232215 34 27 29398188 35 27 38631166 36 28 4260306 37 29 2221989 38 29 11176536 39 29 18617579 40 30 10874305 41 31 1869676 42 31 7784509 43 35 1754451 44 35 13395860 45 38 6452720 46 38 8221420 47 47 461947 48 47 7976094 Thread #11 end of input stream, nextChar=-1 Completed: thread #4 Completed: thread #3 Completed: thread #9 Completed: thread #5 Completed: thread #1 Completed: thread #10 Completed: thread #7 Completed: thread #8 Completed: thread #6 Completed: thread #2 Completed: thread #11 Completed: thread #0 Joined thread # 1 Joined thread # 2 Joined thread # 3 Joined thread # 4 Joined thread # 5 Joined thread # 6 Joined thread # 7 Joined thread # 8 Joined thread # 9 Joined thread # 10 Joined thread # 11 Jul 22 11:01:21 ..... finished mapping RAM after mapping: VmPeak: 16908892 kB; VmSize: 15653060 kB; VmHWM: 14238112 kB; VmRSS: 13717544 kB; RAM after freeing genome index memory: VmPeak: 16908892 kB; VmSize: 4708876 kB; VmHWM: 14238112 kB; VmRSS: 3339632 kB; Jul 22 11:01:22 ..... started sorting BAM Max memory needed for sorting = 263998109 ALL DONE!