Sample Category AS-1.2 AS-0.6 AS-2 AS-1.2_I60 AS-1.2_I150 1 Sequence pairs analysed in total: 100000 100000 100000 100000 100000 1 Number of paired-end alignments with a unique best hit: 55304 35458 79505 52694 16486 1 Mapping efficiency: 55.3% 35.5% 79.5% 52.7% 16.5% 1 Sequence pairs with no alignments under any condition: 27490 51704 213 31468 78915 1 Sequence pairs did not map uniquely: 17206 12838 20282 15838 4599 1 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 0 0 1 C methylated in CpG context: 68.8% 72.4% 65.9% 68.8% 64.6% 1 C methylated in CHG context: 3.2% 2.6% 4.7% 3.2% 3.3% 1 C methylated in CHH context: 4.0% 2.7% 8.2% 3.9% 4.6% 1 C methylated in unknown context (CN or CHN): 19.7% 24.2% 26.5% 19.4% 20.4% 2 Sequence pairs analysed in total: 100000 100000 100000 100000 100000 2 Number of paired-end alignments with a unique best hit: 25623 13744 84845 22900 7693 2 Mapping efficiency: 25.6% 13.7% 84.8% 22.9% 7.7% 2 Sequence pairs with no alignments under any condition: 66914 81302 573 70581 90152 2 Sequence pairs did not map uniquely: 7463 4954 14582 6519 2155 2 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 0 0 2 C methylated in CpG context: 69.2% 73.7% 64.0% 69.3% 66.7% 2 C methylated in CHG context: 3.9% 2.5% 13.6% 3.5% 3.8% 2 C methylated in CHH context: 7.3% 2.6% 27.5% 5.7% 5.9% 2 C methylated in unknown context (CN or CHN): 26.3% 23.8% 42.6% 22.4% 20.9% 3 Sequence pairs analysed in total: 100000 100000 100000 100000 100000 3 Number of paired-end alignments with a unique best hit: 50484 31325 79272 45073 10983 3 Mapping efficiency: 50.5% 31.3% 79.3% 45.1% 11.0% 3 Sequence pairs with no alignments under any condition: 33358 56828 526 41197 85462 3 Sequence pairs did not map uniquely: 16158 11847 20202 13730 3555 3 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 0 0 3 C methylated in CpG context: 70.2% 74.3% 67.2% 70.0% 63.0% 3 C methylated in CHG context: 3.4% 2.6% 6.3% 3.2% 3.8% 3 C methylated in CHH context: 5.4% 2.8% 14.2% 4.9% 7.4% 3 C methylated in unknown context (CN or CHN): 20.9% 23.2% 34.6% 18.8% 20.0% 4 Sequence pairs analysed in total: 100000 100000 100000 100000 100000 4 Number of paired-end alignments with a unique best hit: 55171 34892 78192 51869 16093 4 Mapping efficiency: 55.2% 34.9% 78.2% 51.9% 16.1% 4 Sequence pairs with no alignments under any condition: 26540 51558 310 31536 79129 4 Sequence pairs did not map uniquely: 18289 13550 21498 16595 4778 4 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 0 0 4 C methylated in CpG context: 76.3% 80.0% 73.2% 76.2% 71.6% 4 C methylated in CHG context: 3.1% 2.5% 4.5% 3.1% 3.5% 4 C methylated in CHH context: 3.8% 2.4% 7.9% 3.8% 5.0% 4 C methylated in unknown context (CN or CHN): 18.7% 22.4% 25.3% 18.4% 20.0% 5 Sequence pairs analysed in total: 100000 100000 100000 100000 100000 5 Number of paired-end alignments with a unique best hit: 56412 35879 78339 51868 14079 5 Mapping efficiency: 56.4% 35.9% 78.3% 51.9% 14.1% 5 Sequence pairs with no alignments under any condition: 25464 50638 695 32383 81720 5 Sequence pairs did not map uniquely: 18124 13483 20966 15749 4201 5 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 0 0 5 C methylated in CpG context: 65.5% 69.6% 62.3% 65.2% 60.1% 5 C methylated in CHG context: 3.0% 2.4% 4.9% 3.0% 3.4% 5 C methylated in CHH context: 4.3% 2.7% 8.8% 4.2% 6.4% 5 C methylated in unknown context (CN or CHN): 18.4% 22.1% 26.7% 18.1% 19.5% 6 Sequence pairs analysed in total: 100000 100000 100000 100000 100000 6 Number of paired-end alignments with a unique best hit: 53779 33466 79734 50679 14504 6 Mapping efficiency: 53.8% 33.5% 79.7% 50.7% 14.5% 6 Sequence pairs with no alignments under any condition: 29695 54437 374 34356 81332 6 Sequence pairs did not map uniquely: 16526 12097 19892 14965 4164 6 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 0 0 6 C methylated in CpG context: 67.1% 71.1% 63.8% 66.9% 61.6% 6 C methylated in CHG context: 3.2% 2.6% 5.0% 3.2% 3.5% 6 C methylated in CHH context: 4.1% 2.6% 9.1% 4.0% 5.1% 6 C methylated in unknown context (CN or CHN): 19.5% 21.8% 27.5% 19.1% 19.7% 7 Sequence pairs analysed in total: 100000 100000 100000 100000 100000 7 Number of paired-end alignments with a unique best hit: 56844 35383 78624 52453 14166 7 Mapping efficiency: 56.8% 35.4% 78.6% 52.5% 14.2% 7 Sequence pairs with no alignments under any condition: 25108 51529 323 31628 81561 7 Sequence pairs did not map uniquely: 18048 13088 21053 15919 4273 7 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 0 0 7 C methylated in CpG context: 72.8% 77.7% 69.2% 72.6% 68.1% 7 C methylated in CHG context: 3.2% 2.6% 4.6% 3.2% 3.6% 7 C methylated in CHH context: 4.2% 2.7% 8.1% 4.2% 5.8% 7 C methylated in unknown context (CN or CHN): 18.4% 22.7% 24.6% 18.0% 19.4% 8 Sequence pairs analysed in total: 100000 100000 100000 100000 100000 8 Number of paired-end alignments with a unique best hit: 53463 33107 80059 50979 16821 8 Mapping efficiency: 53.5% 33.1% 80.1% 51.0% 16.8% 8 Sequence pairs with no alignments under any condition: 30401 55205 386 34216 78580 8 Sequence pairs did not map uniquely: 16136 11688 19555 14805 4599 8 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 0 0 8 C methylated in CpG context: 71.0% 75.0% 67.3% 70.9% 66.7% 8 C methylated in CHG context: 3.3% 2.7% 5.0% 3.3% 3.6% 8 C methylated in CHH context: 4.1% 2.7% 8.6% 4.1% 5.1% 8 C methylated in unknown context (CN or CHN): 18.5% 21.6% 25.7% 18.1% 19.8% 9 Sequence pairs analysed in total: 100000 100000 100000 100000 100000 9 Number of paired-end alignments with a unique best hit: 48884 30256 81008 45836 14354 9 Mapping efficiency: 48.9% 30.3% 81.0% 45.8% 14.4% 9 Sequence pairs with no alignments under any condition: 36530 59165 385 40924 81679 9 Sequence pairs did not map uniquely: 14586 10579 18607 13240 3967 9 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 0 0 9 C methylated in CpG context: 66.1% 69.9% 63.0% 65.9% 61.8% 9 C methylated in CHG context: 3.3% 2.7% 6.1% 3.3% 3.4% 9 C methylated in CHH context: 4.7% 2.9% 12.8% 4.4% 5.9% 9 C methylated in unknown context (CN or CHN): 20.0% 22.8% 32.1% 18.9% 20.5% 10 Sequence pairs analysed in total: 100000 100000 100000 100000 100000 10 Number of paired-end alignments with a unique best hit: 52449 32194 79357 49112 14107 10 Mapping efficiency: 52.4% 32.2% 79.4% 49.1% 14.1% 10 Sequence pairs with no alignments under any condition: 30963 55792 540 35939 81677 10 Sequence pairs did not map uniquely: 16588 12014 20103 14949 4216 10 Sequence pairs which were discarded because genomic sequence could not be extracted: 0 0 0 0 0 10 C methylated in CpG context: 75.8% 79.5% 72.4% 75.7% 70.4% 10 C methylated in CHG context: 3.5% 2.9% 5.2% 3.4% 3.6% 10 C methylated in CHH context: 4.2% 2.8% 8.8% 4.1% 5.3% 10 C methylated in unknown context (CN or CHN): 19.5% 23.2% 27.3% 19.1% 20.9%