Mapping efficiency:	16.5% 
Mapping efficiency:	7.7% 
Mapping efficiency:	11.0% 
Mapping efficiency:	16.1% 
Mapping efficiency:	14.1% 
Mapping efficiency:	14.5% 
Mapping efficiency:	14.2% 
Mapping efficiency:	16.8% 
Mapping efficiency:	14.4% 
Mapping efficiency:	14.1% 

Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_10_s1_R1_bismark_bt2_pe.deduplicated.bam:	16483
Total number duplicated alignments removed:	0 (0.00%)
Duplicated alignments were found at:	0 different position(s)

Total count of deduplicated leftover sequences: 16483 (100.00% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_10_s1_R1_bismark_bt2_pe.bam:	16486
Total number duplicated alignments removed:	3 (0.02%)
Duplicated alignments were found at:	3 different position(s)

Total count of deduplicated leftover sequences: 16483 (99.98% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_1_s1_R1_bismark_bt2_pe.deduplicated.bam:	7683
Total number duplicated alignments removed:	0 (0.00%)
Duplicated alignments were found at:	0 different position(s)

Total count of deduplicated leftover sequences: 7683 (100.00% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_1_s1_R1_bismark_bt2_pe.bam:	7693
Total number duplicated alignments removed:	10 (0.13%)
Duplicated alignments were found at:	6 different position(s)

Total count of deduplicated leftover sequences: 7683 (99.87% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_2_s1_R1_bismark_bt2_pe.deduplicated.bam:	10974
Total number duplicated alignments removed:	0 (0.00%)
Duplicated alignments were found at:	0 different position(s)

Total count of deduplicated leftover sequences: 10974 (100.00% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_2_s1_R1_bismark_bt2_pe.bam:	10983
Total number duplicated alignments removed:	9 (0.08%)
Duplicated alignments were found at:	8 different position(s)

Total count of deduplicated leftover sequences: 10974 (99.92% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_3_s1_R1_bismark_bt2_pe.deduplicated.bam:	16090
Total number duplicated alignments removed:	0 (0.00%)
Duplicated alignments were found at:	0 different position(s)

Total count of deduplicated leftover sequences: 16090 (100.00% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_3_s1_R1_bismark_bt2_pe.bam:	16093
Total number duplicated alignments removed:	3 (0.02%)
Duplicated alignments were found at:	3 different position(s)

Total count of deduplicated leftover sequences: 16090 (99.98% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_4_s1_R1_bismark_bt2_pe.deduplicated.bam:	14076
Total number duplicated alignments removed:	0 (0.00%)
Duplicated alignments were found at:	0 different position(s)

Total count of deduplicated leftover sequences: 14076 (100.00% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_4_s1_R1_bismark_bt2_pe.bam:	14079
Total number duplicated alignments removed:	3 (0.02%)
Duplicated alignments were found at:	3 different position(s)

Total count of deduplicated leftover sequences: 14076 (99.98% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_5_s1_R1_bismark_bt2_pe.deduplicated.bam:	14500
Total number duplicated alignments removed:	0 (0.00%)
Duplicated alignments were found at:	0 different position(s)

Total count of deduplicated leftover sequences: 14500 (100.00% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_5_s1_R1_bismark_bt2_pe.bam:	14504
Total number duplicated alignments removed:	4 (0.03%)
Duplicated alignments were found at:	4 different position(s)

Total count of deduplicated leftover sequences: 14500 (99.97% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_6_s1_R1_bismark_bt2_pe.deduplicated.bam:	14164
Total number duplicated alignments removed:	0 (0.00%)
Duplicated alignments were found at:	0 different position(s)

Total count of deduplicated leftover sequences: 14164 (100.00% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_6_s1_R1_bismark_bt2_pe.bam:	14166
Total number duplicated alignments removed:	2 (0.01%)
Duplicated alignments were found at:	2 different position(s)

Total count of deduplicated leftover sequences: 14164 (99.99% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_7_s1_R1_bismark_bt2_pe.deduplicated.bam:	16813
Total number duplicated alignments removed:	0 (0.00%)
Duplicated alignments were found at:	0 different position(s)

Total count of deduplicated leftover sequences: 16813 (100.00% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_7_s1_R1_bismark_bt2_pe.bam:	16821
Total number duplicated alignments removed:	8 (0.05%)
Duplicated alignments were found at:	8 different position(s)

Total count of deduplicated leftover sequences: 16813 (99.95% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_8_s1_R1_bismark_bt2_pe.deduplicated.bam:	14352
Total number duplicated alignments removed:	0 (0.00%)
Duplicated alignments were found at:	0 different position(s)

Total count of deduplicated leftover sequences: 14352 (100.00% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_8_s1_R1_bismark_bt2_pe.bam:	14354
Total number duplicated alignments removed:	2 (0.01%)
Duplicated alignments were found at:	2 different position(s)

Total count of deduplicated leftover sequences: 14352 (99.99% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_9_s1_R1_bismark_bt2_pe.deduplicated.bam:	14098
Total number duplicated alignments removed:	0 (0.00%)
Duplicated alignments were found at:	0 different position(s)

Total count of deduplicated leftover sequences: 14098 (100.00% of total)


Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt6/zr2096_9_s1_R1_bismark_bt2_pe.bam:	14107
Total number duplicated alignments removed:	9 (0.06%)
Duplicated alignments were found at:	9 different position(s)

Total count of deduplicated leftover sequences: 14098 (99.94% of total)