Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt5/zr2096_6_s1_R1_bismark_bt2_pe.bam:	52453
Total number duplicated alignments removed:	12 (0.02%)
Duplicated alignments were found at:	12 different position(s)

Total count of deduplicated leftover sequences: 52441 (99.98% of total)