Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt5/zr2096_5_s1_R1_bismark_bt2_pe.bam:	50679
Total number duplicated alignments removed:	19 (0.04%)
Duplicated alignments were found at:	19 different position(s)

Total count of deduplicated leftover sequences: 50660 (99.96% of total)