Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt3/zr2096_2_s1_R1_bismark_bt2_pe.bam:	31325
Total number duplicated alignments removed:	9 (0.03%)
Duplicated alignments were found at:	9 different position(s)

Total count of deduplicated leftover sequences: 31316 (99.97% of total)