Sequence pairs analysed in total:	100000
Number of paired-end alignments with a unique best hit:	55304
Mapping efficiency:	55.3% 
Sequence pairs with no alignments under any condition:	27490
Sequence pairs did not map uniquely:	17206
Sequence pairs which were discarded because genomic sequence could not be extracted:	0
C methylated in CpG context:	68.8%
C methylated in CHG context:	3.2%
C methylated in CHH context:	4.0%
C methylated in unknown context (CN or CHN):	19.7%
Sequence pairs analysed in total:	100000
Number of paired-end alignments with a unique best hit:	25623
Mapping efficiency:	25.6% 
Sequence pairs with no alignments under any condition:	66914
Sequence pairs did not map uniquely:	7463
Sequence pairs which were discarded because genomic sequence could not be extracted:	0
C methylated in CpG context:	69.2%
C methylated in CHG context:	3.9%
C methylated in CHH context:	7.3%
C methylated in unknown context (CN or CHN):	26.3%
Sequence pairs analysed in total:	100000
Number of paired-end alignments with a unique best hit:	50484
Mapping efficiency:	50.5% 
Sequence pairs with no alignments under any condition:	33358
Sequence pairs did not map uniquely:	16158
Sequence pairs which were discarded because genomic sequence could not be extracted:	0
C methylated in CpG context:	70.2%
C methylated in CHG context:	3.4%
C methylated in CHH context:	5.4%
C methylated in unknown context (CN or CHN):	20.9%
Sequence pairs analysed in total:	100000
Number of paired-end alignments with a unique best hit:	55171
Mapping efficiency:	55.2% 
Sequence pairs with no alignments under any condition:	26540
Sequence pairs did not map uniquely:	18289
Sequence pairs which were discarded because genomic sequence could not be extracted:	0
C methylated in CpG context:	76.3%
C methylated in CHG context:	3.1%
C methylated in CHH context:	3.8%
C methylated in unknown context (CN or CHN):	18.7%
Sequence pairs analysed in total:	100000
Number of paired-end alignments with a unique best hit:	56412
Mapping efficiency:	56.4% 
Sequence pairs with no alignments under any condition:	25464
Sequence pairs did not map uniquely:	18124
Sequence pairs which were discarded because genomic sequence could not be extracted:	0
C methylated in CpG context:	65.5%
C methylated in CHG context:	3.0%
C methylated in CHH context:	4.3%
C methylated in unknown context (CN or CHN):	18.4%
Sequence pairs analysed in total:	100000
Number of paired-end alignments with a unique best hit:	53779
Mapping efficiency:	53.8% 
Sequence pairs with no alignments under any condition:	29695
Sequence pairs did not map uniquely:	16526
Sequence pairs which were discarded because genomic sequence could not be extracted:	0
C methylated in CpG context:	67.1%
C methylated in CHG context:	3.2%
C methylated in CHH context:	4.1%
C methylated in unknown context (CN or CHN):	19.5%
Sequence pairs analysed in total:	100000
Number of paired-end alignments with a unique best hit:	56844
Mapping efficiency:	56.8% 
Sequence pairs with no alignments under any condition:	25108
Sequence pairs did not map uniquely:	18048
Sequence pairs which were discarded because genomic sequence could not be extracted:	0
C methylated in CpG context:	72.8%
C methylated in CHG context:	3.2%
C methylated in CHH context:	4.2%
C methylated in unknown context (CN or CHN):	18.4%
Sequence pairs analysed in total:	100000
Number of paired-end alignments with a unique best hit:	53463
Mapping efficiency:	53.5% 
Sequence pairs with no alignments under any condition:	30401
Sequence pairs did not map uniquely:	16136
Sequence pairs which were discarded because genomic sequence could not be extracted:	0
C methylated in CpG context:	71.0%
C methylated in CHG context:	3.3%
C methylated in CHH context:	4.1%
C methylated in unknown context (CN or CHN):	18.5%
Sequence pairs analysed in total:	100000
Number of paired-end alignments with a unique best hit:	48884
Mapping efficiency:	48.9% 
Sequence pairs with no alignments under any condition:	36530
Sequence pairs did not map uniquely:	14586
Sequence pairs which were discarded because genomic sequence could not be extracted:	0
C methylated in CpG context:	66.1%
C methylated in CHG context:	3.3%
C methylated in CHH context:	4.7%
C methylated in unknown context (CN or CHN):	20.0%
Sequence pairs analysed in total:	100000
Number of paired-end alignments with a unique best hit:	52449
Mapping efficiency:	52.4% 
Sequence pairs with no alignments under any condition:	30963
Sequence pairs did not map uniquely:	16588
Sequence pairs which were discarded because genomic sequence could not be extracted:	0
C methylated in CpG context:	75.8%
C methylated in CHG context:	3.5%
C methylated in CHH context:	4.2%
C methylated in unknown context (CN or CHN):	19.5%