Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt2/zr2096_9_s1_R1_bismark_bt2_pe.bam:	52449
Total number duplicated alignments removed:	35 (0.07%)
Duplicated alignments were found at:	35 different position(s)

Total count of deduplicated leftover sequences: 52414 (99.93% of total)