Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt2/zr2096_5_s1_R1_bismark_bt2_pe.bam: 53779 Total number duplicated alignments removed: 20 (0.04%) Duplicated alignments were found at: 20 different position(s) Total count of deduplicated leftover sequences: 53759 (99.96% of total)