Total number of alignments analysed in /Volumes/web/metacarcinus/Cvirginica/Bismark_attempt2/zr2096_4_s1_R1_bismark_bt2_pe.bam:	56412
Total number duplicated alignments removed:	14 (0.02%)
Duplicated alignments were found at:	13 different position(s)

Total count of deduplicated leftover sequences: 56398 (99.98% of total)