zr2096_9_s1_R1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.20.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 9180203 lines in total Total number of methylation call strings processed: 18360406 Final Cytosine Methylation Report ================================= Total number of C's analysed: 247569836 Total methylated C's in CpG context: 24620940 Total methylated C's in CHG context: 2094757 Total methylated C's in CHH context: 7736902 Total C to T conversions in CpG context: 9054979 Total C to T conversions in CHG context: 52006634 Total C to T conversions in CHH context: 152055624 C methylated in CpG context: 73.1% C methylated in CHG context: 3.9% C methylated in CHH context: 4.8%