CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 158750 78402 66.94 237152 2 210037 90179 69.96 300216 3 213942 99966 68.15 313908 4 138505 111646 55.37 250151 5 143265 88696 61.76 231961 6 94069 64684 59.25 158753 7 113912 62323 64.64 176235 8 123023 63341 66.01 186364 9 130319 65815 66.44 196134 10 132440 59308 69.07 191748 11 162649 62886 72.12 225535 12 177667 63639 73.63 241306 13 161297 62455 72.09 223752 14 151041 60691 71.34 211732 15 157442 62272 71.66 219714 16 155916 61797 71.62 217713 17 167463 75007 69.07 242470 18 162844 63946 71.80 226790 19 162422 62218 72.30 224640 20 170703 64043 72.72 234746 21 175016 65117 72.88 240133 22 171633 61933 73.48 233566 23 172468 62463 73.41 234931 24 172059 62863 73.24 234922 25 176422 62665 73.79 239087 26 176509 61751 74.08 238260 27 175927 63925 73.35 239852 28 177699 61654 74.24 239353 29 179193 61446 74.47 240639 30 179544 61791 74.40 241335 31 181525 60675 74.95 242200 32 180888 60700 74.87 241588 33 181927 61091 74.86 243018 34 184509 59387 75.65 243896 35 185694 61163 75.22 246857 36 185663 61407 75.15 247070 37 183181 59359 75.53 242540 38 188590 61627 75.37 250217 39 187181 60261 75.65 247442 40 185618 59718 75.66 245336 41 190803 61540 75.61 252343 42 192687 60501 76.10 253188 43 193559 59482 76.49 253041 44 195820 60628 76.36 256448 45 194873 59846 76.51 254719 46 193977 59215 76.61 253192 47 195119 59554 76.62 254673 48 196052 59925 76.59 255977 49 197337 59688 76.78 257025 50 201881 60993 76.80 262874 51 196272 59934 76.61 256206 52 193450 58505 76.78 251955 53 195646 59181 76.78 254827 54 196867 58747 77.02 255614 55 195475 58655 76.92 254130 56 197225 59992 76.68 257217 57 198896 60385 76.71 259281 58 196741 58975 76.94 255716 59 196898 59496 76.80 256394 60 195403 58634 76.92 254037 61 194423 57798 77.08 252221 62 194765 58670 76.85 253435 63 193873 57997 76.97 251870 64 194836 58963 76.77 253799 65 196147 60197 76.52 256344 66 196808 60691 76.43 257499 67 197635 60416 76.59 258051 68 193828 59825 76.41 253653 69 194381 59797 76.47 254178 70 192241 59462 76.38 251703 71 192741 59906 76.29 252647 72 192138 58797 76.57 250935 73 190111 58849 76.36 248960 74 191276 59260 76.35 250536 75 188475 59182 76.10 247657 76 187082 58426 76.20 245508 77 188170 58994 76.13 247164 78 187030 59135 75.98 246165 79 185722 58613 76.01 244335 80 185870 60286 75.51 246156 81 185940 59670 75.71 245610 82 182808 59514 75.44 242322 83 181645 59973 75.18 241618 84 181171 60132 75.08 241303 85 177770 59381 74.96 237151 86 177265 59283 74.94 236548 87 176704 60218 74.58 236922 88 176206 60167 74.55 236373 89 174918 59303 74.68 234221 90 173212 59941 74.29 233153 91 172318 59037 74.48 231355 92 169241 60046 73.81 229287 93 167252 60850 73.32 228102 94 164537 59206 73.54 223743 95 161611 59707 73.02 221318 96 158882 59983 72.59 218865 97 153301 58737 72.30 212038 98 138020 55927 71.16 193947 99 110448 51369 68.25 161817 100 27005 31848 45.89 58853 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 123185 509625 19.47 632810 2 72283 188591 27.71 260874 3 75877 286732 20.93 362609 4 36916 355724 9.40 392640 5 22095 423757 4.96 445852 6 16064 479845 3.24 495909 7 15104 316686 4.55 331790 8 15997 308726 4.93 324723 9 15128 309441 4.66 324569 10 20279 316857 6.02 337136 11 30827 318656 8.82 349483 12 15108 322209 4.48 337317 13 14942 332126 4.31 347068 14 13496 332066 3.91 345562 15 16258 334961 4.63 351219 16 18072 335077 5.12 353149 17 13929 345916 3.87 359845 18 14282 362749 3.79 377031 19 13696 348691 3.78 362387 20 13682 347504 3.79 361186 21 13405 342858 3.76 356263 22 12618 347820 3.50 360438 23 12643 341495 3.57 354138 24 12412 341976 3.50 354388 25 12236 357966 3.31 370202 26 12010 360737 3.22 372747 27 12391 356436 3.36 368827 28 12008 368378 3.16 380386 29 11646 364410 3.10 376056 30 11377 362593 3.04 373970 31 11657 369281 3.06 380938 32 11143 360211 3.00 371354 33 10881 369252 2.86 380133 34 10802 373230 2.81 384032 35 10559 372738 2.75 383297 36 10879 370651 2.85 381530 37 10744 381976 2.74 392720 38 10270 377693 2.65 387963 39 10668 389749 2.66 400417 40 10204 379280 2.62 389484 41 9874 386067 2.49 395941 42 9940 385253 2.52 395193 43 9836 393637 2.44 403473 44 9413 383870 2.39 393283 45 9474 386459 2.39 395933 46 9442 388388 2.37 397830 47 9319 385384 2.36 394703 48 9395 385789 2.38 395184 49 9063 393956 2.25 403019 50 9114 391005 2.28 400119 51 9518 391509 2.37 401027 52 8993 394703 2.23 403696 53 8936 391768 2.23 400704 54 9246 387394 2.33 396640 55 9071 394766 2.25 403837 56 8802 390041 2.21 398843 57 9049 392270 2.25 401319 58 8740 390757 2.19 399497 59 8680 388666 2.18 397346 60 9620 382798 2.45 392418 61 8624 391143 2.16 399767 62 8894 385689 2.25 394583 63 8652 384909 2.20 393561 64 8609 387659 2.17 396268 65 8817 385731 2.23 394548 66 8907 385617 2.26 394524 67 8971 393885 2.23 402856 68 8726 385267 2.21 393993 69 8966 384665 2.28 393631 70 8564 386432 2.17 394996 71 8633 379724 2.22 388357 72 8695 381258 2.23 389953 73 8552 383768 2.18 392320 74 8570 377996 2.22 386566 75 8483 378175 2.19 386658 76 8568 378116 2.22 386684 77 8541 376368 2.22 384909 78 8550 373107 2.24 381657 79 8656 373926 2.26 382582 80 8597 371742 2.26 380339 81 8790 370487 2.32 379277 82 8701 371124 2.29 379825 83 8695 367732 2.31 376427 84 8604 366377 2.29 374981 85 8522 370239 2.25 378761 86 8558 364794 2.29 373352 87 8734 360240 2.37 368974 88 8716 361747 2.35 370463 89 8771 358620 2.39 367391 90 8754 355473 2.40 364227 91 8742 355395 2.40 364137 92 8941 353675 2.47 362616 93 9121 353111 2.52 362232 94 9561 357870 2.60 367431 95 9511 348461 2.66 357972 96 9804 346525 2.75 356329 97 10233 345640 2.88 355873 98 10240 335216 2.96 345456 99 10005 326885 2.97 336890 100 5393 262196 2.02 267589 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 267532 466122 36.47 733654 2 283116 595037 32.24 878153 3 213882 556575 27.76 770457 4 139453 671507 17.20 810960 5 86330 858235 9.14 944565 6 77271 962052 7.43 1039323 7 74076 1129302 6.16 1203378 8 82034 1128418 6.78 1210452 9 62874 1050564 5.65 1113438 10 63103 1032711 5.76 1095814 11 68504 1024250 6.27 1092754 12 63922 1015374 5.92 1079296 13 62588 1062452 5.56 1125040 14 61019 1055669 5.46 1116688 15 65361 1071076 5.75 1136437 16 69448 1005799 6.46 1075247 17 60248 1026428 5.54 1086676 18 58704 1017167 5.46 1075871 19 61978 1047707 5.59 1109685 20 60672 1063758 5.40 1124430 21 58011 1024953 5.36 1082964 22 56791 1024565 5.25 1081356 23 56485 1043305 5.14 1099790 24 53573 1044899 4.88 1098472 25 54923 1067040 4.90 1121963 26 52865 1084753 4.65 1137618 27 51683 1070039 4.61 1121722 28 50771 1088646 4.46 1139417 29 51312 1096577 4.47 1147889 30 48745 1090876 4.28 1139621 31 50050 1097267 4.36 1147317 32 47703 1089205 4.20 1136908 33 46878 1105712 4.07 1152590 34 46259 1111355 4.00 1157614 35 46740 1121653 4.00 1168393 36 44093 1118094 3.79 1162187 37 44554 1120775 3.82 1165329 38 42908 1128228 3.66 1171136 39 42496 1114859 3.67 1157355 40 41633 1122939 3.57 1164572 41 42389 1162399 3.52 1204788 42 39539 1126072 3.39 1165611 43 39958 1132421 3.41 1172379 44 39105 1143437 3.31 1182542 45 38563 1142157 3.27 1180720 46 37550 1144106 3.18 1181656 47 36686 1152932 3.08 1189618 48 35455 1144634 3.00 1180089 49 35567 1150172 3.00 1185739 50 35226 1161070 2.94 1196296 51 34229 1157812 2.87 1192041 52 34246 1146623 2.90 1180869 53 33568 1157323 2.82 1190891 54 33103 1141182 2.82 1174285 55 32982 1137686 2.82 1170668 56 32688 1156727 2.75 1189415 57 32673 1151740 2.76 1184413 58 32305 1164809 2.70 1197114 59 32338 1174593 2.68 1206931 60 33870 1129858 2.91 1163728 61 31202 1134684 2.68 1165886 62 32333 1154867 2.72 1187200 63 30552 1116414 2.66 1146966 64 30593 1111748 2.68 1142341 65 30760 1117317 2.68 1148077 66 30311 1115450 2.65 1145761 67 30317 1126689 2.62 1157006 68 29574 1112822 2.59 1142396 69 29621 1123858 2.57 1153479 70 29427 1108929 2.59 1138356 71 29533 1103422 2.61 1132955 72 28992 1100676 2.57 1129668 73 29016 1101858 2.57 1130874 74 29134 1118202 2.54 1147336 75 28445 1096627 2.53 1125072 76 28317 1087128 2.54 1115445 77 28686 1097806 2.55 1126492 78 28810 1111937 2.53 1140747 79 29283 1103437 2.59 1132720 80 28263 1090666 2.53 1118929 81 28633 1084684 2.57 1113317 82 28742 1086819 2.58 1115561 83 28717 1069172 2.62 1097889 84 27974 1058857 2.57 1086831 85 28467 1056661 2.62 1085128 86 28519 1057475 2.63 1085994 87 28367 1054147 2.62 1082514 88 29430 1059255 2.70 1088685 89 29425 1057219 2.71 1086644 90 29062 1034826 2.73 1063888 91 29389 1032730 2.77 1062119 92 29196 1030899 2.75 1060095 93 29674 1020027 2.83 1049701 94 30698 1024696 2.91 1055394 95 31184 1026136 2.95 1057320 96 32471 1027503 3.06 1059974 97 33375 1020480 3.17 1053855 98 33341 995781 3.24 1029122 99 28928 968129 2.90 997057 100 16427 782322 2.06 798749 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 143438 78066 64.76 221504 2 188514 85483 68.80 273997 3 199316 94441 67.85 293757 4 119940 91354 56.76 211294 5 120337 86123 58.29 206460 6 81765 60636 57.42 142401 7 87888 56024 61.07 143912 8 99711 56341 63.90 156052 9 101810 56495 64.31 158305 10 105398 51193 67.31 156591 11 122117 52284 70.02 174401 12 134462 53706 71.46 188168 13 129275 52292 71.20 181567 14 116343 49187 70.29 165530 15 116358 49303 70.24 165661 16 116832 48404 70.71 165236 17 122735 60144 67.11 182879 18 116207 47406 71.03 163613 19 112574 45735 71.11 158309 20 115395 45974 71.51 161369 21 115520 45338 71.81 160858 22 110320 43513 71.71 153833 23 110234 41300 72.75 151534 24 108181 42516 71.79 150697 25 111094 41750 72.68 152844 26 106324 39739 72.79 146063 27 103988 40464 71.99 144452 28 101840 38321 72.66 140161 29 100725 37061 73.10 137786 30 99018 36717 72.95 135735 31 96989 35409 73.26 132398 32 94009 34769 73.00 128778 33 92592 34485 72.86 127077 34 92787 32697 73.94 125484 35 91471 33420 73.24 124891 36 88018 32323 73.14 120341 37 86083 30719 73.70 116802 38 87288 30532 74.09 117820 39 83522 29974 73.59 113496 40 81061 28380 74.07 109441 41 83007 29357 73.87 112364 42 80800 28443 73.96 109243 43 79119 27150 74.45 106269 44 79544 27547 74.28 107091 45 76019 25919 74.57 101938 46 73133 24880 74.62 98013 47 71891 24239 74.79 96130 48 70694 24384 74.35 95078 49 70662 23743 74.85 94405 50 71549 24295 74.65 95844 51 66303 22916 74.31 89219 52 64127 21637 74.77 85764 53 63002 21265 74.76 84267 54 61925 20877 74.79 82802 55 60788 20286 74.98 81074 56 59476 20402 74.46 79878 57 59029 20573 74.16 79602 58 56408 19075 74.73 75483 59 54771 18690 74.56 73461 60 53592 18062 74.79 71654 61 51209 17608 74.41 68817 62 49766 16835 74.72 66601 63 48442 16683 74.38 65125 64 47219 16362 74.27 63581 65 47222 16697 73.88 63919 66 46133 16554 73.59 62687 67 46235 16480 73.72 62715 68 43031 15385 73.66 58416 69 41639 14751 73.84 56390 70 40051 14496 73.42 54547 71 39291 13967 73.77 53258 72 38584 13788 73.67 52372 73 37844 13435 73.80 51279 74 36342 12985 73.68 49327 75 34229 12812 72.76 47041 76 33593 12611 72.71 46204 77 32563 12312 72.56 44875 78 31121 11916 72.31 43037 79 30371 11521 72.50 41892 80 29814 11632 71.93 41446 81 28778 11299 71.81 40077 82 27656 10950 71.64 38606 83 26740 10458 71.89 37198 84 25718 10514 70.98 36232 85 24358 9688 71.54 34046 86 23434 9415 71.34 32849 87 22946 9377 70.99 32323 88 22532 9181 71.05 31713 89 21754 8650 71.55 30404 90 21122 8544 71.20 29666 91 20525 8346 71.09 28871 92 19348 7955 70.86 27303 93 19164 8115 70.25 27279 94 17610 7268 70.79 24878 95 16849 6885 70.99 23734 96 16376 6831 70.56 23207 97 15184 6452 70.18 21636 98 13275 5849 69.42 19124 99 10733 5443 66.35 16176 100 3082 3429 47.34 6511 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 109389 585802 15.74 695191 2 52387 191062 21.52 243449 3 55183 263952 17.29 319135 4 31678 328817 8.79 360495 5 19878 407403 4.65 427281 6 13761 452846 2.95 466607 7 12514 287899 4.17 300413 8 12708 266639 4.55 279347 9 12113 265963 4.36 278076 10 15416 264523 5.51 279939 11 24413 259679 8.59 284092 12 11832 261876 4.32 273708 13 12270 267525 4.39 279795 14 10650 263005 3.89 273655 15 12700 254714 4.75 267414 16 14169 249634 5.37 263803 17 10291 252810 3.91 263101 18 10730 266358 3.87 277088 19 9668 242500 3.83 252168 20 9445 237891 3.82 247336 21 9234 233520 3.80 242754 22 8654 231386 3.61 240040 23 8595 222057 3.73 230652 24 8043 217832 3.56 225875 25 8129 224762 3.49 232891 26 7907 220994 3.45 228901 27 7713 211276 3.52 218989 28 7444 215317 3.34 222761 29 7199 208294 3.34 215493 30 6670 205380 3.15 212050 31 6892 203860 3.27 210752 32 6499 195634 3.22 202133 33 6230 196998 3.07 203228 34 6070 192971 3.05 199041 35 5917 185725 3.09 191642 36 5735 182035 3.05 187770 37 5584 185697 2.92 191281 38 5497 178277 2.99 183774 39 5633 184741 2.96 190374 40 5023 171459 2.85 176482 41 4993 172404 2.81 177397 42 4673 168773 2.69 173446 43 4810 170234 2.75 175044 44 4288 157448 2.65 161736 45 4427 157220 2.74 161647 46 4202 153877 2.66 158079 47 4183 146742 2.77 150925 48 4076 147379 2.69 151455 49 3767 146237 2.51 150004 50 3729 141225 2.57 144954 51 3835 140992 2.65 144827 52 3647 138056 2.57 141703 53 3398 133455 2.48 136853 54 3386 127948 2.58 131334 55 3420 127984 2.60 131404 56 3166 123757 2.49 126923 57 3245 122887 2.57 126132 58 2952 115786 2.49 118738 59 3013 113460 2.59 116473 60 2755 110514 2.43 113269 61 2828 108944 2.53 111772 62 2675 105561 2.47 108236 63 2756 101707 2.64 104463 64 2584 99928 2.52 102512 65 2548 97801 2.54 100349 66 2521 95271 2.58 97792 67 2677 95914 2.72 98591 68 2443 90572 2.63 93015 69 2474 88783 2.71 91257 70 2266 86641 2.55 88907 71 2124 82079 2.52 84203 72 2317 80450 2.80 82767 73 2202 79517 2.69 81719 74 2180 76308 2.78 78488 75 2048 74414 2.68 76462 76 2021 72850 2.70 74871 77 1872 69895 2.61 71767 78 1970 68853 2.78 70823 79 2015 65343 2.99 67358 80 1825 64356 2.76 66181 81 1664 61727 2.62 63391 82 1728 59931 2.80 61659 83 1723 58126 2.88 59849 84 1734 55621 3.02 57355 85 1607 55532 2.81 57139 86 1660 52586 3.06 54246 87 1492 50951 2.84 52443 88 1433 49727 2.80 51160 89 1485 48436 2.97 49921 90 1425 46714 2.96 48139 91 1306 45015 2.82 46321 92 1393 44020 3.07 45413 93 1291 42725 2.93 44016 94 1299 43836 2.88 45135 95 1255 39116 3.11 40371 96 1208 37252 3.14 38460 97 1175 36235 3.14 37410 98 1114 34042 3.17 35156 99 955 32427 2.86 33382 100 367 25804 1.40 26171 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 201462 456280 30.63 657742 2 211889 601411 26.05 813300 3 163775 559470 22.64 723245 4 116689 621828 15.80 738517 5 75459 800237 8.62 875696 6 67373 893569 7.01 960942 7 62483 1029834 5.72 1092317 8 67878 1015889 6.26 1083767 9 52066 920162 5.36 972228 10 52030 897306 5.48 949336 11 57504 866602 6.22 924106 12 51784 834494 5.84 886278 13 50618 860831 5.55 911449 14 48855 839467 5.50 888322 15 53131 822642 6.07 875773 16 55822 762459 6.82 818281 17 46523 768487 5.71 815010 18 44699 752761 5.61 797460 19 47551 769803 5.82 817354 20 44733 764632 5.53 809365 21 42836 716222 5.64 759058 22 41221 699725 5.56 740946 23 41235 694011 5.61 735246 24 38285 681775 5.32 720060 25 38434 686560 5.30 724994 26 37040 684405 5.13 721445 27 36107 660826 5.18 696933 28 34545 664677 4.94 699222 29 34737 655590 5.03 690327 30 32286 642050 4.79 674336 31 32965 638867 4.91 671832 32 31215 612342 4.85 643557 33 29952 611697 4.67 641649 34 29176 597621 4.65 626797 35 29533 589055 4.77 618588 36 26985 578628 4.46 605613 37 27141 567819 4.56 594960 38 25680 561086 4.38 586766 39 25330 544139 4.45 569469 40 24346 539304 4.32 563650 41 24673 554981 4.26 579654 42 22585 516997 4.19 539582 43 22680 508117 4.27 530797 44 21764 501658 4.16 523422 45 20840 492902 4.06 513742 46 19977 484030 3.96 504007 47 19104 476950 3.85 496054 48 17974 464378 3.73 482352 49 17621 456099 3.72 473720 50 17745 452429 3.77 470174 51 16525 442698 3.60 459223 52 16242 427651 3.66 443893 53 15805 422317 3.61 438122 54 14608 404187 3.49 418795 55 14508 391529 3.57 406037 56 14279 394244 3.50 408523 57 13732 383630 3.46 397362 58 13499 386214 3.38 399713 59 13480 379978 3.43 393458 60 12392 349824 3.42 362216 61 12235 342227 3.45 354462 62 12065 349415 3.34 361480 63 11542 320166 3.48 331708 64 11120 307908 3.49 319028 65 11140 305327 3.52 316467 66 10620 299705 3.42 310325 67 10822 298724 3.50 309546 68 10005 282155 3.42 292160 69 9689 284157 3.30 293846 70 9391 270270 3.36 279661 71 9222 259517 3.43 268739 72 8792 252701 3.36 261493 73 8637 248177 3.36 256814 74 8680 251354 3.34 260034 75 8274 234859 3.40 243133 76 8131 225227 3.48 233358 77 7879 223601 3.40 231480 78 7852 228434 3.32 236286 79 7998 217745 3.54 225743 80 7448 205577 3.50 213025 81 7129 199890 3.44 207019 82 6986 197048 3.42 204034 83 6913 184695 3.61 191608 84 6766 175945 3.70 182711 85 6338 171781 3.56 178119 86 6467 168041 3.71 174508 87 5933 161988 3.53 167921 88 6030 162185 3.58 168215 89 5926 156471 3.65 162397 90 5336 144777 3.55 150113 91 5262 139909 3.62 145171 92 4944 135674 3.52 140618 93 4889 129473 3.64 134362 94 4950 128402 3.71 133352 95 4751 124747 3.67 129498 96 4595 123067 3.60 127662 97 4517 119715 3.64 124232 98 3901 111591 3.38 115492 99 3002 106851 2.73 109853 100 1503 84701 1.74 86204