/gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_9_s1_R1.fastq.gz and /gscratch/srlab/strigg/data/Cvirg/FASTQS/18-04-07/zr2096_9_s1_R2.fastq.gz
Data processed at 03:44 on 2018-11-07
Alignment Stats
Sequence pairs analysed in total
32636231
Paired-end alignments with a unique best hit
10389383
Pairs without alignments under any condition
19378195
Pairs that did not map uniquely
2868653
Genomic sequence context not extractable (edges of chromosomes)
2
Cytosine Methylation
Total C's analysed
393776621
Methylated C's in CpG context
40612390
Methylated C's in CHG context
2982484
Methylated C's in CHH context
10534650
Methylated C's in Unknown context
1349020
Unmethylated C's in CpG context
13936979
Unmethylated C's in CHG context
84223643
Unmethylated C's in CHH context
241486475
Unmethylated C's in Unknown context
5462880
Percentage methylation (CpG context)
74.5%
Percentage methylation (CHG context)
3.4%
Percentage methylation (CHH context)
4.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
2817892
original top strand
CTOT
2366113
complementary to original top strand
CTOB
2380610
complementary to original bottom strand
OB
2824766
original bottom strand
Deduplication
Alignments analysed
10389381
Unique alignments
9180203
Duplicates removed
1209178
Duplicated alignments were found at 999307 different positions
